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Job DescriptionP69910
Confidence99.48%DateThu Jan 5 12:12:18 GMT 2012
Rank227Aligned Residues359
% Identity14%Templatec3f6tA_
PDB info PDB header:transferaseChain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6970.........80.........90.........100.........110.........120.........130.........140........
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Query Sequence  DENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAA
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Template Sequence  DKVVAEWVNGAVANNYPVPDRCLV. . NTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHL. . . . . .
Template Known Secondary structure  T
S

SSSS

..TTT


GGGTTS......
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   117..120.........130.........140 .........150.........160.........170.........180........
 
   149150.........160.........170.........180.. .......190.........200.........210....... ..220..
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Query Sequence  GKPTDKPNLVCGPVQICWHKFARYWDVELREIPM. . . RPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNY. . . EFPQP
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Template Sequence  . LKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNA
Template Known Secondary structure  .S
TT
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TSGGGGGS


TTTTS
S
TTSS
TTT
B


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   189190.........200.........210.........220.........230.........240.........250.........260.......
 
   223......230 .........240.........250.........260.........270.........280.........290.........300.
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Query Sequence  LHDALDKF. QADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVF
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Template Sequence  IKQAVEKNPK. . . . . . LXIISDEVYGA. . . . FVPNFKSIYSVVPYNTXLVYSYSLFGCTGWRLGVIALNEKNVFDDNIAH
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TTGG....GSTT


SGGG



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   268.270....... ..280........ .290.........300.........310.........320.........330.......
 
   302.... ...310.........320.........330.........340.........350...
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Query Sequence  NVDYL. . . . . . . . . . . . . . . . . . . . . . . . . . . . GGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYL
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Template Sequence  LDKVELRQLHKRYSSVVLDPDKXKFIDRLCADSRSIGLYHTAGLSTPQQIXEALFSXTHLLTSTNGGSDDPYIDIARKLV
Template Known Secondary structure  S
TT
S
GGG

TTTTTGGG
S

TT
BGGGTB
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   339340.........350.........360.........370.........380.........390.........400.........410........
 
   354.....360.........370.........380...... ...390.........400.. .... ...410........
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Query Sequence  ADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE. . . . . . . . . . . . . DPGYTLYDLSERLRLR. GWQV. PAFTLGGEATDI
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Template Sequence  SERYDQLHDAXQAPKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGF. . . GAKP
Template Known Secondary structure  T




STTB

S


TTSSS
TT...
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   419420.........430.........440.........450.........460.........470.........480.........490. ....
 
   419420.........430.........440.........450
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Query Sequence  VVMRIMCRRGFEMDFAELLLEDYKASLKYLSD
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Template Sequence  GELRVSQAN. LPTEDYALIGKQVLELLKEYYE
Template Known Secondary structure  TSSS.S
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   496...500.... .....510.........520......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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