Job Description P69910 Confidence 99.58% Date Thu Jan 5 12:12:18 GMT 2012 Rank 209 Aligned Residues 350 % Identity 13% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		D	E	L	Y	L	D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	.	.	.	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I
Query Conservation																																																	.	.	.
Alig confidence																																																	.	.	.																										.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		R	A	L	L	K	E	I	T	P	K	K	R	G	L	D	L	G	I	G	E	P	Q	F	E	T	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	L	N	I	Y	P	K	S	A	F	E	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K	I	E	L	K	E	N	E	L	I	S	.	.	.	T	L
Template Known Secondary structure						T	T				S	S				B					S			S												T	T	G	G	G	G	G	S				T	T																		S					G	G	G				.	.	.		S
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.				.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.																																						.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.																																						.	.
Template Sequence		G	S	R	E	V	L	F	N	F	P	S	F	V	L	F	.	.	.	.	.	.	.	.	.	.	D	Y	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	I	Y	E	G	A	A	K	F	I	K	A	K	S	L	L	X	P	L	T	K	E	N	.	.	D	F	T	P	S	L	N	E	K	E	L	Q	E	V	D	L
Template Known Secondary structure		S	S												T	T	.	.	.	.	.	.	.	.	.	.	T		S	S								S			T									T	T										G	G	G	.	.	T	T													S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																																						.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.											.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																																										.	.	.	.	.
Query SS confidence																	.	.	.																																										.	.	.	.	.
Query Sequence		V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	.	.	.	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	.	.	.	.	.	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K
Query Conservation																	.	.	.																																										.	.	.	.	.
Alig confidence																	.	.	.													.	.	.	.	.	.																								.	.	.	.	.
Template Conservation																																.	.	.	.	.	.
Template Sequence		V	I	L	N	S	P	N	N	P	T	G	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	.	.	.	.	.	.	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S	L	S	K
Template Known Secondary structure						S	S		T	T	T																			T	T	.	.	.	.	.	.								T	T	T	T		B	S	S	S												T	T		T	T		T	T							S
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	S	A	P	G	L	R	S	G	F	I	A	G	D	S	R	L	L	E	K	Y	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	A	Y	L	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	D	D	R	H	A	E	F	F	R	N	I	Y	A	N	N	L	K	L	A	R	K
Template Known Secondary structure				T		G	G	G																		.	.	.	.	.	.	.	.	.	.	.	.	.																								S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.														.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	.	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E
Query Conservation																																																				.
Alig confidence					.	.	.	.	.	.	.	.																		.	.	.	.	.	.																	.																					.	.
Template Conservation					.	.	.	.	.	.	.	.																		.	.	.	.	.	.																																						.	.
Template Sequence		I	F	K	.	.	.	.	.	.	.	.	N	T	L	I	Y	P	Y	S	F	Y	V	Y	L	P	V	Q	N	.	.	.	.	.	.	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	R	I	G	A	D	Y	V	R	L	A	L	V	.	.	Y	D	T	P	L	L	E
Template Known Secondary structure			S	T	.	.	.	.	.	.	.	.	T					S	B	S	S							S		.	.	.	.	.	.															B				G	G	G	G		S	T	T	T	T	T	T								.	.	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.																		.	.	.	.	.	.																																						.	.
Template SS confidence
		298	.	300									.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.							.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.
		436	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	E	D	Y	K	A	S	L	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	L	E	I	I	E	T	Y	R	E	N
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions