Job Description P69910 Confidence 99.95% Date Thu Jan 5 12:12:18 GMT 2012 Rank 49 Aligned Residues 343 % Identity 13% Template c3ecdC_ PDB info PDB header:transferase Chain: C: PDB Molecule:serine hydroxymethyltransferase 2; PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei Resolution 1.60 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	V	A	F	Q	I	I	N	D	E	L	Y	L	D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A
Query Conservation
Alig confidence															.									.																									.	.	.	.	.																					.	.	.	.	.	.
Template Conservation															.									.																									.	.	.	.	.																					.	.	.	.	.	.
Template Sequence		D	A	S	V	R	G	A	I	L	K	E	L	E	.	R	Q	Q	S	Q	V	E	L	.	I	A	S	E	N	I	V	S	R	A	V	L	D	A	Q	G	S	V	L	T	N	K	Y	A	.	.	.	.	.	E	G	Y	D	E	V	E	A	L	A	I	E	R	V	K	R	L	F	N	A	.	.	.	.	.	.	G	H
Template Known Secondary structure															.					S				.		T	T													T	S	G	G	G	S	S		T	.	.	.	.	.	T																	T	T		.	.	.	.	.	.	S
Template Predicted Secondary structure															.									.																									.	.	.	.	.																					.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80							.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	V	Q	P	H	S	G	A	Q	A	N	G	A	V	M	L	A	L	.	.	.	.	.	.	.	.	.	.	.	.	A	K	P	G	D	T	V	L	G	M	S	L	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	Q	Y	G	V	S	R	D	T	M	L	I	D	Y	D	Q	V	E	A	L	A
Template Known Secondary structure							S	S													.	.	.	.	.	.	.	.	.	.	.	.			T	T											.	.	.	.	.	.	.	.	.	.	.	.	.						B		T	T	T		S	B
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.													.	.	.	.	.	.	120	.	.	.	.	.	.	.														.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G
Query Conservation
Alig confidence																.																			.	.	.	.	.	.																									.	.	.	.
Template Conservation																.																			.	.	.	.	.	.																									.	.	.	.
Template Sequence		Q	Q	H	K	P	S	L	I	I	A	G	F	S	A	.	Y	P	R	K	L	D	F	A	R	F	R	A	I	A	D	S	V	G	.	.	.	.	.	.	A	K	L	M	V	D	M	A	H	I	A	G	V	I	A	A	G	R	H	A	N	P	V	E	.	.	.	.	H	A	H	V	V	T	S	T	T	H	K	T	L
Template Known Secondary structure							S							S		.		S	S														T	T	.	.	.	.	.	.								T	T	T						T	T	S	S			G	G	G	.	.	.	.	T		S						S	S	G	G	G
Template Predicted Secondary structure																.																			.	.	.	.	.	.																									.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A
Query Conservation
Alig confidence							.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	P	R	G	.	G	F	V	L	T	N	D	E	E	I	A	K	K	I	N	S	A	V	G	P	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	I	A	G	K	A	V	A	F	G	E	A	L	T	D	D	F	K	T	Y	I	D	R	V	L	A	N	A	Q	A	L	G	D	V	L	K
Template Known Secondary structure			S		S		.						S																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	S
Template Predicted Secondary structure							.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.																.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.				.	420	.	.	.	.	.					.	.	.	.	430	.
Predicted Secondary structure																																																														.	.	.								.	.	.	.
Query SS confidence																																																														.	.	.								.	.	.	.
Query Sequence		K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	.	.	.	V	V	M	R	I	M	C	.	.	.	.	R	R	G	F	E	M
Query Conservation																																																														.	.	.								.	.	.	.
Alig confidence					.											.	.	.										.	.	.																																.	.	.								.	.	.	.
Template Conservation					.											.	.	.										.	.	.
Template Sequence		A	G	G	.	V	D	L	V	T	G	G	T	D	N	.	.	.	H	L	L	L	V	D	L	R	P	.	.	.	K	G	L	K	G	A	Q	V	E	Q	A	L	E	R	A	G	I	T	C	N	K	N	G	I	P	F	D	P	E	K	P	T	I	T	S	G	I	R	L	G	T	P	A	G	T	T	R	G	F	G	A
Template Known Secondary structure			T	T	.				G	G	G	S		S	S	.	.	.	S							G	G	.	.	.	G	T													T	T									T	T		S	S		T	T	T		S												T	T
Template Predicted Secondary structure					.											.	.	.										.	.	.
Template SS confidence
		307	.	.		310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L	S	D	H	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	F	R	E	V	G	R	L	I	L	E	V	F	E	A	L	R	T	N	P	E
Template Known Secondary structure																			T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions