Job Description P69910 Confidence 99.86% Date Thu Jan 5 12:12:18 GMT 2012 Rank 105 Aligned Residues 327 % Identity 13% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G
Query Conservation
Alig confidence																	.																															.	.	.	.										.	.	.	.	.	.	.
Template Conservation																	.																															.	.	.	.										.	.	.	.	.	.	.
Template Sequence		A	Y	P	I	F	Q	T	S	T	F	C	F	D	S	T	.	Q	Q	G	A	D	L	F	M	G	K	G	E	G	H	I	Y	S	R	L	G	N	P	T	V	E	Q	F	E	E	M	.	.	.	.	V	C	S	I	E	G	A	A	G	.	.	.	.	.	.	.	S	A	A	F	G	S	G	M	G	A	I	S	S	S
Template Known Secondary structure		S							S	B				S	S		.								T	T		S	S			S	B	T	T	T												.	.	.	.						T		S		.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure																	.																															.	.	.	.										.	.	.	.	.	.	.
Template SS confidence
		1523	.	.	.	.	.	.	1530	.	.	.	.	.	.	.		.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.					.	.	1570	.	.	.	.	.	.								.	.	.	1580	.	.	.	.	.	.	.	.	.	1590
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	.	.	.	.	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F
Query Conservation																																		.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.																			.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Sequence		T	L	A	F	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	S	.	.	.	.	.	.	D	V	E	K	V	K	A	A	W	K	P	N	T	K	M	V	Y	L	E	S
Template Known Secondary structure			T	T	T	.	.	.	.	.	.	.	.	.	.	.	.			T	T							S	S																T	T								T	T	.	.	.	.	.	.	S										T	T								S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
		1591	.	.	.													.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.							.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	.	G	W	V	I
Query Conservation																																																																													.
Alig confidence																								.	.	.	.	.	.																		.	.	.	.	.	.	.	.																							.
Template Conservation																								.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Sequence		P	A	N	P	T	C	K	V	S	D	I	K	G	I	A	V	V	C	H	E	R	G	.	.	.	.	.	.	A	R	L	V	V	D	A	T	F	T	S	P	C	F	L	K	P	.	.	.	.	.	.	.	.	L	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S
Template Known Secondary structure		S		T	T	T																	T	.	.	.	.	.	.								T	T	T		T	T	T			G	.	.	.	.	.	.	.	.	G	G	G	T		S						T	T	T	T	T	T		S	S	S
Template Predicted Secondary structure																								.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template SS confidence
		1653	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.							.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.									.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		S	A	K	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	.	.	.	.	.	.	.	.	.	.	.	.	M	A	P	M	D	A	F	L	C	A	R	G	M	.	.	K	T	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H
Template Known Secondary structure				S	S																		.	.	.	.	.	.	.	.	.	.	.	.														.	.	T	T																					T		T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		1719	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.													1740	.	.	.	.	.	.	.	.	.	1750	.	.			.	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.
		369	370														.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	K	.	.	.	.	S	F	E	A	A	K	K	L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G
Template Known Secondary structure		T	T	S	T	T	S	T	T									S	S			S							S	.	.	.	.	S									T	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S									T
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		1785	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.					.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860
				418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	I	V	V	M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		I	T	P	E	L	V	R	I	S	V	G	I	E	N	V	D	D	I	I	A	D	L	K	Q	A	L	E
Template Known Secondary structure				T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		1861	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions