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Job DescriptionP69910
Confidence99.92%DateThu Jan 5 12:12:18 GMT 2012
Rank78Aligned Residues346
% Identity10%Templatec3a2bA_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   53......60........ .70.........80.........90... ......100.........110.........120.......
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Query Sequence  DGNARQNLATFCQTWD. . DENVHKLMDLSINKNWIDKEEYPQS. . . AAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS
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Template Sequence  DGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEA. . . . . . . AILFSTGF
Template Known Secondary structure  TT
S
S
TT
GGG

S


SBTTTT


T
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   42.......50.........60.........70.........80.........90.........100...... ...110....
 
   128.130.........140.........150.........160.........170.........180.........190.........200.......
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Query Sequence  EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVP
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Template Sequence  QSNLGPLSCL. . . . . . . . . . . . MGRNDYILLDERDHASIIDGSRLSFSKVIKYGHN. N. MEDLRAKLSRLPEDSAKLICT
Template Known Secondary structure  S............S
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TT

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   115....120.... .....130.........140.........150........ . 160.........170.........180
 
   208.210.........220.........230.........240.........250.........260.........270.........280.......
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Query Sequence  TFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWV
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Template Sequence  DGIFSMEGDIVNLPELTSIANEFD. . . . . . AAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSL. . ASLGGF
Template Known Secondary structure  SB
TTT

B

T......

TTTTTTSSGGG

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SSSSTT..
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   181........190.........200.... .....210.........220.........230.........240...... ...250..
 
   288.290.........300.........310.........320.........330.........340.........350.........360.......
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Query Sequence  IWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFIC
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Template Sequence  VAGDADVIDFLKHNARSVMFSASM. . . . . . . . . . TPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDHG. FDLG.
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   253......260.........270...... ...280.........290.........300.........310...... ...320
 
   368.370.........380.........390.........400.........410.........420.........430.........440.......
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Query Sequence  TGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY
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Template Sequence  . . . . ATESPILPIFIR. . . . SNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ
Template Known Secondary structure  ....S

SS

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TTTS
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   321........330.. .......340.........350.........360.........370.........380.........390..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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