Job Description P69910 Confidence 99.63% Date Thu Jan 5 12:12:18 GMT 2012 Rank 202 Aligned Residues 352 % Identity 12% Template c2zy3A_ PDB info PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase Resolution 2.50 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P
Query Conservation
Alig confidence																							.	.																																																	.	.	.	.	.	.	.
Template Conservation																							.	.																																																	.	.	.	.	.	.	.
Template Sequence		L	H	E	M	V	D	G	I	L	G	C	N	Y	P	V	P	P	R	M	L	N	.	.	I	S	E	K	I	V	R	Q	Y	I	I	R	E	M	G	A	D	A	I	P	S	E	S	V	N	L	F	A	V	E	G	G	T	A	A	M	A	Y	I	F	E	S	L	K	L	N	G	L	.	.	.	.	.	.	.	L	K
Template Known Secondary structure											T		S			S	S	T	T				.	.														T	T		T	T	S		G	G	G							S																T	T	S	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																							.	.																																																	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.
Predicted Secondary structure																							.	.															.																																.	.	.
Query SS confidence																							.	.															.																																.	.	.
Query Sequence		T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	.	.	W	D	V	E	L	R	E	I	P	M	R	P	G	Q	.	L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	.	.	.	E	F	P	Q	P	L	H	D
Query Conservation																							.	.															.																																.	.	.
Alig confidence																							.	.															.																																.	.	.
Template Conservation
Template Sequence		A	G	D	K	V	A	I	G	M	P	V	F	T	P	Y	I	E	I	P	E	L	A	Q	Y	A	L	E	E	V	A	I	N	A	D	P	S	L	N	W	Q	Y	P	D	S	E	L	D	K	L	K	D	P	A	I	K	I	F	F	C	V	N	P	S	N	P	P	S	V	K	M	D	Q	R	S	L	E	R	V	R	N
Template Known Secondary structure		T	T								S			T					S	T	T	S	T	T	T										B	G	G	G	T	S	B							G	G	G	G		T	T								S	S		S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	.	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D
Query Conservation																																																										.
Alig confidence								.	.	.	.														.	.	.	.																														.
Template Conservation								.	.	.	.														.	.	.	.
Template Sequence		I	V	A	E	H	R	.	.	.	.	P	D	L	M	I	L	T	D	D	V	Y	G	T	.	.	.	.	F	A	D	D	F	Q	S	L	F	A	I	C	P	E	N	T	L	L	V	Y	S	F	S	K	Y	F	G	A	T	G	W	R	L	G	V	V	A	A	H	Q	Q	N	V	F	D	L	A	L	D	K	L	Q	E
Template Known Secondary structure						T		.	.	.	.	T	T								T	T	G	G	.	.	.	.	G	S	S	S									G	G	G							S	T	T	T	T	T		G	G	G									S	S									S	S
Template Predicted Secondary structure								.	.	.	.														.	.	.	.
Template SS confidence
		273	.	.	.	.	.					.	280	.	.	.	.	.	.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		305	.																															.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S	Y	Q	V	A	A	Y	L	A
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	K	V	A	L	D	H	R	Y	R	S	L	L	P	D	V	R	S	L	K	F	I	D	R	L	V	A	D	S	R	A	V	A	L	N	H	T	A	G	L	S	T	P	Q	Q	V	Q	M	A	L	F	S	L	F	A	L	M	D	E	A	D	E	Y	K	H	T	L	K	Q	L	I	R	R	R	E	T	T	L	Y
Template Known Secondary structure											T	T	T	T		S		G	G	G											T	T	T	T	T	T	G	G	G		S	S																			T	T																			T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.													.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.															.					.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.															.					.
Query Sequence		D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	.	G	W	Q	V	.	P	A	F	T	L	G	G	E	A	T	D	I	V	V
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.															.					.
Alig confidence										.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.															.					.						.	.	.
Template Conservation										.	.	.	.	.	.																																																										.	.	.
Template Sequence		R	E	L	G	M	P	P	L	.	.	.	.	.	.	R	D	E	N	A	V	D	Y	Y	T	L	I	D	L	Q	D	V	T	A	K	L	Y	G	E	A	F	S	E	W	A	V	K	Q	S	S	T	G	D	M	L	F	R	I	A	D	E	T	G	I	V	L	L	P	G	R	G	F	.	.	.	G	S	N	R	P	S
Template Known Secondary structure		T	T	T	T	S				.	.	.	.	.	.			T	T	B			S																																								S								S	S	.	.	.		T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.																																																										.	.	.
Template SS confidence
		425	.	.	.	.	430	.	.							.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.				490	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y	L	S	D
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		G	R	A	S	L	.	A	N	L	N	E	Y	E	Y	A	A	I	G	R	A	L	R	K	M	A	D	E	L	Y	A
Template Known Secondary structure						S	.	S	S	S
Template Predicted Secondary structure							.
Template SS confidence
		496	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions