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Job DescriptionP69910
Confidence99.87%DateThu Jan 5 12:12:18 GMT 2012
Rank96Aligned Residues321
% Identity15%Templatec2vycA_
PDB info PDB header:lyaseChain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
Resolution2.4 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.........150.........160.........170.......
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Query Sequence  LRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVEL
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Template Sequence  GESEKYAARVFGA. . . . . . DRSWSVVVGTSGSNRTIMQAC. . . . . . . . . . . . MTDNDVVVVDRNCHKSIEQGLMLTGAKP
Template Known Secondary structure  T
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TT
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   208.210.........220 .........230.........240. ........250.........260.........
 
   178.180......... 190.........200.. .......210.........220.........230........
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Query Sequence  REIPMRPGQLFM. . . . . . . . . DPKRMIEACDENT. . . . . . . . . . IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDI
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Template Sequence  VYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD. GVCYNAKEAQDLLEKTS. . . . . . D
Template Known Secondary structure 


B
TTS
B



GGGGS
TTTGGGTT


S
SS
TT.S
TTT
......S
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   270.........280.........290.........300.........310.........320.... .....330.........340. .
 
   239240.........250.........260........ .270.........280.........290... ......300.........
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Query Sequence  DMHIDAASGGFLAPFVAPDIVWDFRLPRVK. . . . . . . SISASGHKFGLAPLGCGWVIWRDEE. . ALPQELVFNVDYLGGQ
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Template Sequence  RLHFDEAWYGY. ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHL. LNALSQASYIHVREGRGAINFSRFNQAYMMHATT
Template Known Secondary structure 
TT
TT.GGG
GGGTTSSSS
S




SSB


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S

TT


BT


TS
S
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   343......350... ......360.........370.........380...... ...390.........400.........410.........420
 
   310.........320.........330.........340.........350.........360.
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Query Sequence  IGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLG. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SPLYAI. . . . . . . . CASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTY
Template Known Secondary structure  S

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SS
S
TTT

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   422..... ..430.........440.........450.........460.........470.........480.........490...
 
   362.......370.........380...... ...390.........400.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . PYEFICTGRPDEGIPAVCFKLKDGE. . . . . . DPGYTLYDLSERLRLRGWQVPAF
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Template Sequence  DFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPT. .
Template Known Secondary structure  GGGS

GGGTB

TT
TTT

TT

TTS
TT
S
B
TTSSB
SS


TTT


S..
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   494.....500.........510.........520.........530.........540.........550.........560.........570.
 
   410.........420.........430.........440.........450.........460
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Query Sequence  TLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHPKLQGIAQQ
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Template Sequence  . . . . . RTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPE
Template Known Secondary structure  .....
SS

TT

TTTTT
B
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   572.......580.........590.........600.........610.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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