Job Description P69910 Confidence 99.96% Date Thu Jan 5 12:12:18 GMT 2012 Rank 46 Aligned Residues 363 % Identity 17% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		R	D	D	V	A	F	Q	I	I	N	D	E	L	Y	L	D	G	N	A	R	Q	N	L	A	T	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	.	.	.	.	.	.	.	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence																				.					.																									.	.	.	.	.	.	.
Template Conservation																				.					.
Template Sequence		R	D	E	A	L	F	E	L	I	A	L	E	E	K	R	Q	R	E	.	G	L	E	L	.	I	A	S	E	N	F	V	S	K	Q	V	R	E	A	V	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	A	R	Y	Y	G	G	C	E	V	I	D	R	V	E	S	L	A	I	E	R	A	K	A	L	F	G	A
Template Known Secondary structure																				.	S				.		T	T													T	S	G	G	G	G							T	T			S	S	S																					T
Template Predicted Secondary structure																				.					.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.
Predicted Secondary structure																																																					.	.																							.	.
Query SS confidence																																																					.	.																							.	.
Query Sequence		P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E	A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	.	.	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	E	L	R	E	I	P	M	R	.	.	P	G	Q
Query Conservation																																																					.	.																							.	.
Alig confidence		.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.												.	.																							.	.
Template Conservation		.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	A	W	A	N	V	Q	P	H	S	G	S	Q	A	N	M	A	V	Y	M	A	L	M	E	.	.	.	.	.	.	.	.	.	.	.	P	G	D	T	L	M	G	M	D	L	A	A	G	G	H	L	T	H	G	S	R	V	N	F	S	G	K	L	Y	K	V	V	S	Y	G	V	R	P	D	T
Template Known Secondary structure		.	.	.	.	.	.	S							S	S															.	.	.	.	.	.	.	.	.	.	.	T	T								G	G	G	T			G	G	G	T		T	T	S						S									T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.												.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	M	D	P	K	R	M	I	E	A	C	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F	R	L	P	R
Query Conservation
Alig confidence																													.																		.	.	.	.	.	.																.	.	.	.
Template Conservation																													.																		.	.	.	.	.	.																.	.	.	.
Template Sequence		E	L	I	D	L	E	E	V	R	R	L	A	L	E	H	R	P	K	V	I	V	A	G	A	S	A	Y	.	P	R	F	W	D	F	K	A	F	R	E	I	A	D	E	V	G	.	.	.	.	.	.	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	.	.	.	.	A	G	L	H	P	N	P	L	P	Y
Template Known Secondary structure			S																S							S	S		.		S															T	.	.	.	.	.	.								T	T	T						.	.	.	.	T	T	S	S				T	T	T
Template Predicted Secondary structure																													.																		.	.	.	.	.	.																.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.					.	.	.	210	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V	Q	N	A	S
Query Conservation
Alig confidence															.																									.	.	.	.	.	.	.	.	.
Template Conservation															.																									.	.	.	.	.	.	.	.	.
Template Sequence		A	H	V	V	T	S	T	T	H	K	T	L	R	.	G	P	R	G	G	L	I	L	S	N	D	P	E	L	G	K	R	I	D	K	L	I	F	P	.	.	.	.	.	.	.	.	.	G	I	Q	G	G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	Q	P	E	F	K	E	Y	S	R	L	V
Template Known Secondary structure			S						S	S	G	G	G		.			S							S													T	T	.	.	.	.	.	.	.	.	.	T	T		S	S																	T	S
Template Predicted Secondary structure															.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.										.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.				.	.	420	.	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	.	.	.	I	V	V	M	R	I
Query Conservation																																																																									.	.	.
Alig confidence																	.																			.	.	.	.	.	.																																.	.	.
Template Conservation																	.																			.	.	.	.	.	.
Template Sequence		V	E	N	A	K	R	L	A	E	E	L	A	R	R	G	.	Y	R	I	V	T	G	G	T	D	N	H	L	F	L	V	D	L	R	.	.	.	.	.	.	P	K	G	L	T	G	K	E	A	E	E	R	L	D	A	V	G	I	T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	S	G	I	R	I
Template Known Secondary structure														T	T	T	.				G	G	G	S		S	S	S							G	.	.	.	.	.	.	G	G	T												T	T	T									T	T			S		T	T	T		S
Template Predicted Secondary structure																	.																			.	.	.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.							320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		424	.	.					.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		M	C	R	.	.	.	.	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.
Template Conservation
Template Sequence		G	T	P	A	I	T	T	R	G	F	T	P	E	E	M	P	L	V	A	E	L	I	D	R	A	L	L	E
Template Known Secondary structure									T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions