Job Description P69405 Confidence 99.95% Date Thu Jan 5 12:11:27 GMT 2012 Rank 4 Aligned Residues 192 % Identity 15% Template c3klnC_ PDB info PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, luxr family; PDBTitle: vibrio cholerae vpst Resolution 3.08 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	T	I	I	M	D	L	C	S	Y	T	R	L	G	L	T	G	Y	L	L	S	R	G	V	K	K	R	E	I	N	D	I	E	T	V	D	D	L	A	I	A	C	D	S	Q	R	P	S	V	V	F	I	N	E	D	C	F	I	H	D	A	S	N	S	Q	R	I	K	L	I	I	N	Q	H	P	N	T	L	F
Query Conservation
Alig confidence																																																												.
Template Conservation																																																												.
Template Sequence		L	N	V	R	M	L	S	D	V	C	M	Q	S	R	L	L	K	E	A	L	E	S	K	L	P	L	A	L	E	I	T	P	F	S	E	L	W	L	E	E	N	K	P	E	S	R	S	I	Q	M	L	V	I	D	Y	S	R	I	.	S	D	D	V	L	T	D	Y	S	S	F	K	H	I	S	C	P	D	A	K	E
Template Known Secondary structure								S			S														S	S								G	G	G	G	G	G	T	T	T		S	G	G	G	G								G	G	G		.		T	T	T													T	T
Template Predicted Secondary structure																																																												.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	F	M	A	I	A	N	V	H	F	D	E	Y	L	L	V	R	K	N	L	L	I	S	S	K	S	I	K	P	E	S	L	D	D	I	L	G	D	I	L	K	K	E	T	T	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	L	N	M	P	T	L	S	L	S	R	T	E	S	S
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	I	N	C	P	Q	D	I	E	H	K	L	L	F	K	W	N	N	L	A	G	V	F	Y	I	D	D	D	M	D	T	L	I	K	G	M	S	K	I	L	Q	D	E	M	W	L	T	R	K	L	A	Q	E	Y	I	L	H	Y	R	A	G	N	S	V	V	T	S	Q	M	Y	A	K	L	T	K	R	E	Q	Q
Template Known Secondary structure								S	S			G	G	G	G	G	G	S	T	T							T	T															T	T			B																T							T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	R	M	W	M	A	G	Q	G	T	I	Q	I	S	D	Q	M	N	I	K	A	K	T	V	S	S	H	K	G	N	I	K	R	K	I	K	T	H	N	K	Q	V	I	Y	H	V	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	K	L	L	G	S	G	A	S	N	I	E	I	A	D	K	L	F	V	S	E	N	T	V	K	T	H	L	H	N	V	F	K	K	I	N	A	K	N	R	L	Q	A	L	I	W	A	K
Template Known Secondary structure								T	T								T	T	T	T																		T		S	S									T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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