Job Description P69405 Confidence 95.32% Date Thu Jan 5 12:11:27 GMT 2012 Rank 168 Aligned Residues 50 % Identity 18% Template c3iydF_ PDB info PDB header:transcription/dna Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex Resolution 19.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150						.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		L	S	L	S	R	T	E	S	S	M	L	R	M	W	M	.	.	.	.	.	A	G	Q	G	T	I	Q	I	S	D	Q	M	N	I	K	A	K	T	V	S	S	H	K	G	N	I	K	R	K	I	K	T	H	N	K
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.
Template Conservation
Template Sequence		A	G	L	T	A	R	E	A	K	V	L	R	M	R	F	G	I	D	M	N	T	D	H	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R	Q	I	E	A	K	A	L	R	K	L	R	H	P	S	R
Template Known Secondary structure		T	S	S													T	S	S	S					S	T	T	G	G	G	T	T	T	S	S		S	S											T	T	T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions