 |
Job Description | P0A9G2 | Confidence | 35.01% | Date | Thu Jan 5 11:10:07 GMT 2012 |
Rank | 407 | Aligned Residues | 92 |
% Identity | 9% | Template | c3chgB_ |
PDB info |
PDB header:ligand binding protein | Chain: B: PDB Molecule:glycine betaine-binding protein; |
PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa
|
Resolution | 2.80 Å |
|
 |
  |   |
65 | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | |
|
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | G | E | L | V | Y | R | Y | A | D | K | M | F | T | L | S | Q | E | M | L | D | I | V | N | Y | . |
. |
R | K | E | S | N | L | L | F | D | V | G | V | A | D | A | L | S | K | R | L | V | S | S | V | L | N | A | A | V | V | E | G | E | P | I | H | L | R | C | F | E | S | T | H | E | M | L | L | E | Q | L | S | Q |
Query Conservation |   |
  |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|
|   |
|   |   |
|
|   |   |
|   |
|   |
|   |   |
|
|   |
|
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
|   |   |   |
|
|
|   | . |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
Template Sequence |   |
E | G | E | K | P | A | K | V | A | A | E | Y | V | N | K | H | K | D | Q | I | A | E | W | T | K | G | V | Q | K | V | K | G | D | K | I | N | L | A | Y | V | A | W | D | S | E | I | A | S | T | N | V | I | G | K | V | L | E | D | . |
L | G | Y | E | V | T | L | T | Q | V | E | A | G | P | M | W | T | A | I | A | T |
Template Known Secondary structure |   |
T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  | T | T | T |
|
|
|
| S | S |
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T | T |
|  |  |  |  |  |  |
|
| T | T |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
137 | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | |
. | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . |
  |
  |   |
143 | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | K | L | D | M | I | I | S | D | C | P | I | D | S | T |
Query Conservation |   |
  |   |   |
|
|   |
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |   |   |   |
|   |
|   |   |   |
Template Sequence |   |
G | S | A | D | A | S | L | S | A | W | L | P | N | T | H |
Template Known Secondary structure |   |
T | S | S | S |  |  |  |  |  |  |  | T | T | T | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
216 | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|