Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9G2
Confidence78.94%DateThu Jan 5 11:10:07 GMT 2012
Rank245Aligned Residues202
% Identity11%Templatec2x26A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   94.....100.........110.........120.........130. ........140.........150..... ....160.......
Predicted Secondary structure 

















.









.....




Query SS confidence 





































.























. . . . .











Query Sequence  NLLFDVGVADALSKRLVSSVLNAAVVEGEPIHLRCFES. THEMLLEQLSQHKLDMIISDCPID. . . . . STQQEGLFSVRI
Query Conservation                                        .        
     

 
      .....            
Alig confidence 





































.























.....











Template Conservation    




         

   
 
     
  

      
     

  
  

        
     
     
    
Template Sequence  PEALRIGYQKGSIGMVLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEP
Template Known Secondary structure 
S
TT
TT
TTS
SSTS
S
STT


Template Predicted Secondary structure 
























Template SS confidence 















































































   26...30.........40.........50.........60.........70.........80.........90.........100.....
 
   168.170.........180.........190.........200.........210.........220.........230......... 240......
Predicted Secondary structure 

































.
Query SS confidence 







































































.






Query Sequence  GECGVSFWCTNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNA. IFVAPTL
Query Conservation                             
                                      
  
 
.
  

  
Alig confidence 







































































.






Template Conservation         
     
 
 
  




 
    
         
             
          
  
 

     

Template Sequence  PKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIWDP
Template Known Secondary structure 

GGGTT
S

SGGGGTTS
TTSTT

GGGS

TTSSSTT
Template Predicted Secondary structure 


































Template SS confidence 















































































   106...110.........120.........130.........140.........150.........160.........170.........180.....
 
   247..250.........260.........270......... 280.........290.....
Predicted Secondary structure 

















...

Query SS confidence 
































. . .















Query Sequence  YAYDFYADKTVVEIGRVENVMEEYHAIFAERMI. . . QHPAVQRICNTDYSAL
Query Conservation            
              

      ...  
    
        
Alig confidence 
































...















Template Conservation                            
          

 
  
  
   
 
Template Sequence  YYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEAD
Template Known Secondary structure  SSSTTS



T
Template Predicted Secondary structure 














Template SS confidence 



















































   186...190.........200.........210.........220.........230.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions