Job Description P0A9G2 Confidence 73.60% Date Thu Jan 5 11:10:07 GMT 2012 Rank 273 Aligned Residues 196 % Identity 9% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.												.	.	.	.	.	160
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	N	L	L	F	D	V	G	V	A	D	A	L	S	K	R	L	V	S	S	V	L	N	A	A	V	V	E	G	E	P	I	H	L	R	C	F	E	S	T	H	E	M	L	L	E	Q	L	S	Q	H	K	L	D	M	I	I	S	D	C	P	I	.	.	.	.	.	.	.	.	.	.	.	D	S	T	Q	Q	E
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.
Template Sequence		E	S	C	G	T	V	R	F	S	D	V	G	W	T	D	I	T	A	T	T	A	T	A	T	T	I	L	E	A	.	L	G	Y	E	T	D	V	K	V	L	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P	Y	R	E	D	K	S	V	E	T
Template Known Secondary structure					S								S		T	T															.	T	T														T	S	S	T	T	T	T											S	T	T										T	T
Template Predicted Secondary structure																															.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																.	.	.	.	.	.																												.																.
Query SS confidence																																.	.	.	.	.	.																												.																.
Query Sequence		G	L	F	S	V	R	I	G	E	C	G	V	S	F	W	C	T	N	P	P	P	E	K	P	F	P	A	C	L	E	.	.	.	.	.	.	E	R	R	L	L	I	P	G	R	R	S	M	L	G	R	K	L	L	N	W	F	N	S	Q	G	L	N	.	V	E	I	L	G	E	F	D	D	A	A	L	M	K	A	.
Query Conservation																																.	.	.	.	.	.																												.																.
Alig confidence																																.	.	.	.	.	.																												.																.
Template Conservation
Template Sequence		V	R	E	N	L	A	G	A	K	Y	T	L	A	T	N	A	K	G	A	E	L	G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E	S	S	E	Q	G	M	L	A	Q
Template Known Secondary structure																							T			B	T	T	S	S	G	G	G		T	T	T		S							S	S											T	T	T	T		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
					233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270								.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																							.	.	.	.	.	.	.
Query SS confidence		.	.	.																																							.	.	.	.	.	.	.
Query Sequence		.	.	.	F	G	A	M	H	N	A	I	F	V	A	P	T	L	Y	A	Y	D	F	Y	A	D	K	T	V	V	E	I	G	R	V	E	N	V	M	E	E	Y	.	.	.	.	.	.	.	H	A	I	F	A	E	R	M	I	Q	H	P	A	V	Q	R	I	C	N
Query Conservation		.	.	.																																							.	.	.	.	.	.	.
Alig confidence		.	.	.													.																										.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		V	A	R	A	E	K	S	G	D	P	I	V	F	L	G	.	W	E	P	H	P	M	N	A	N	F	K	L	T	Y	L	S	G	G	D	D	V	F	G	P	N	Y	G	G	A	T	V	H	T	N	V	R	A	G	Y	T	T	E	C	P	N	V	D	K	L	L	Q
Template Known Secondary structure						T	T	T	T								.			S	S	G	G	G	G	T	S						B	S			S	S	S		S	T	T	T										T	T					S								T
Template Predicted Secondary structure																	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions