Job Description P0A9G2 Confidence 26.76% Date Thu Jan 5 11:10:07 GMT 2012 Rank 440 Aligned Residues 180 % Identity 8% Template c2rc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution Resolution 1.96 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.												.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		L	N	A	A	V	V	E	G	E	P	I	H	L	R	C	F	E	S	T	.	.	.	.	.	.	.	.	.	.	.	H	E	M	L	L	E	Q	L	S	Q	H	K	L	D	M	I	I	S	D	C	P	I	D	.	.	.	S	T	Q	Q	E	G	L	F	S	V	R	I	G	E	C	G	V	S	F	W	C	T	N	P
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		L	L	E	Q	L	A	E	D	M	N	F	D	F	D	L	Y	I	V	G	D	G	K	Y	G	A	W	K	N	G	H	W	T	G	L	V	G	D	L	L	S	G	T	A	N	M	A	V	T	S	F	S	I	N	T	A	R	S	Q	V	I	D	F	T	S	P	F	F	S	T	S	L	G	I	L	V	R	T	R	G	T
Template Known Secondary structure											T									T	T								T	T												T	S		S				S	S		B							T	T	S				S		S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure													.	.																																																		.	.	.
Query SS confidence													.	.																																																		.	.	.
Query Sequence		P	P	E	K	P	F	P	A	C	L	E	.	.	E	R	R	L	L	I	P	G	R	R	S	M	L	G	R	K	L	L	N	W	F	N	S	Q	G	L	N	V	E	I	L	G	E	F	D	D	A	A	L	M	K	A	F	G	A	M	H	N	A	.	.	.	I	F	V	A	P	T	L	Y	A	Y	D	F	Y	A	D
Query Conservation													.	.																																																		.	.	.
Alig confidence													.	.																																																		.	.	.
Template Conservation
Template Sequence		E	L	S	G	I	H	D	P	K	L	H	H	P	S	Q	G	F	R	F	G	T	V	R	E	S	S	A	E	D	Y	V	R	Q	S	F	P	E	M	H	E	Y	M	R	R	Y	N	V	P	A	T	P	D	G	V	Q	Y	L	K	N	D	P	E	K	L	D	A	F	I	M	D	K	A	L	L	D	Y	E	V	S	I
Template Known Secondary structure					S	T	T						S			T	T						B	T	T	S																		G	G	G		B	S	S										S	S	S				S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		255				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		K	.	.	.	T	V	V	E	I	G	R	V	E	N	V	M	E	E	Y	H	A	I	F	A	E	R	M	I	Q	H	P	A	V	Q	R	I	C	N	T	D	Y	S	A
Query Conservation			.	.	.
Alig confidence			.	.	.							.
Template Conservation												.
Template Sequence		D	A	D	C	K	L	L	T	V	G	.	K	P	F	A	I	E	G	Y	G	I	G	L	P	P	N	S	P	L	T	S	N	I	S	E	L	I	S	Q	Y	K	S	H
Template Known Secondary structure			S	S							S	.														T	T		T	T														T
Template Predicted Secondary structure												.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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