Job Description P0A9G2 Confidence 99.70% Date Thu Jan 5 11:10:07 GMT 2012 Rank 33 Aligned Residues 208 % Identity 11% Template c2f78A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	N	L	L	F	D	V	G	V	A	D	A	L	S	K	R	L	V	S	S	V	L	N	A	A	V	V	E	G	E	P	I	H	L	R	C	F	E	S	T	H	E	M	L	L	E	Q	L	S	Q	H	K	L	D	M	I	I	S	D	C	P	I	D	S	T	Q	Q	E	G	L	F	S	V	R	I	G	E	C	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	E	K	T	I	R	I	G	F	V	G	S	L	L	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	H	P	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K	R	T	L	L	R	N	E	R	L	M	V
Template Known Secondary structure				S									G	G	G	G	G	T	T													T	T																				T	S		S					S						T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																.	.
Query SS confidence																	.	.	.																.	.
Query Sequence		V	S	F	W	C	T	N	P	P	P	E	K	P	F	P	.	.	.	A	C	L	E	E	R	R	L	L	I	P	G	R	R	S	.	.	M	L	G	R	K	L	L	N	W	F	N	S	Q	G	L	N	V	E	I	L	G	E	F	D	D	A	A	L	M	K	A	F	G	A	M	H	N	A	I	F	V	A	P	T	L
Query Conservation																	.	.	.																.	.
Alig confidence																	.	.	.																.	.
Template Conservation
Template Sequence		A	V	H	A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G	L	V	A	A	G	E	G	I	S	L	V	P	A	S
Template Known Secondary structure					T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S	S					S	S											T	S		B					G	G
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	Y	D	F	Y	A	D	K	T	V	V	E	I	G	R	V	E	N	V	M	E	E	Y	H	A	I	F	A	E	R	M	I	Q	H	P	A	V	Q	R	I	C	N	T	D	Y	S	A	L	F	S	P	A	V	R
Query Conservation
Alig confidence																.																			.
Template Conservation																.																			.
Template Sequence		T	Q	S	I	Q	L	F	N	L	S	Y	V	P	L	.	L	D	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	E	E	.	S	T	Y	I	Y	S	L	Y	E	T	I	R	Q	I	Y	A	Y	E	G	F	T
Template Known Secondary structure		G	G	G				T	T						B	.			T	T											S	S			.																		T	T
Template Predicted Secondary structure																.																			.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions