Job Description P0AD96 Confidence 100.00% Date Thu Jan 5 11:20:22 GMT 2012 Rank 32 Aligned Residues 311 % Identity 11% Template d3ckma1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.35

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																														.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		Q	I	G	L	L	L	P	L	S	G	D	G	Q	I	L	G	T	T	I	Q	S	G	F	N	D	A	K	G	.	.	.	.	.	.	.	.	.	N	S	T	I	P	V	Q	V	F	D	T	S	X	N	S	V	Q	D	.	.	I	I	A	Q	A	K	Q	A	G	I	K	T	L	V	G	P	L	L	K	Q	N	L	D
Template Known Secondary structure										S	S	T	T																T	.	.	.	.	.	.	.	.	.	T			S							T	T	T	S					.	.								T	T									S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.										.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	K	Q	Q	Y	G	E	G	L	A	R	A	V	Q	D	G	L	K
Query Conservation
Alig confidence																												.	.																									.
Template Conservation																												.	.																									.
Template Sequence		V	I	L	A	D	P	A	Q	I	Q	G	X	D	V	L	A	L	N	A	T	P	N	S	R	A	I	.	.	P	Q	L	C	Y	Y	G	L	S	P	E	D	E	A	E	S	A	A	N	K	X	W	N	D	.	G	V	R	N	P	L	V	A	X	P	Q	N	D	L	G	Q	R	V	G	N	A	F	N	V	R	W	Q
Template Known Secondary structure							G	G	G	G	T	T						S				T	T					.	.	T	T																						T	.	T			S							S	S
Template Predicted Secondary structure																												.	.																									.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	F	M	G	P	E	G	V	A	N	V	S	L	S	N	I	A	G	E	S	A	E	G
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		Q	L	A	G	T	D	A	N	I	R	Y	Y	.	.	N	L	P	A	D	V	T	Y	F	V	Q	E	N	N	S	N	T	T	A	L	Y	A	V	A	S	P	T	E	L	A	E	X	K	G	Y	L	T	N	I	V	P	N	L	A	I	Y	A	S	S	R	A	S	A	S	A	T	N	T	N	T	D	F	I	A	Q	X
Template Known Secondary structure					S	S								.	.	S	S	T	T									S		T	T																					T	T	T		T	T							G	G	G							T								T
Template Predicted Secondary structure														.	.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.			.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		267					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		L	.	.	.	.	L	V	T	K	P	K	N	Y	D	Q	V	P	A	N	K	P	I	V	D	A	I	K	A	K	K	Q	D	P	S	G	A	F	V	W	T	T	Y	A	A	L	Q	S	L	Q	A	G	L	N	Q	S	D	D	P	A	E	I	A	K	Y	L	K	A	N	S	V	D	T	V	M	G	P	L	T	W	D
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.																											.	.																					.	.	.	.	.	.	.	.
Template Conservation																																	.	.																					.	.	.	.	.	.	.	.
Template Sequence		N	G	V	Q	F	S	D	I	P	F	F	K	D	T	N	S	P	Q	Y	Q	K	L	A	K	S	T	G	G	E	Y	Q	.	.	L	X	R	L	Y	A	X	G	A	D	A	W	L	L	I	N	Q	F	N	E	.	.	.	.	.	.	.	.	L	R	Q	V	P	G	Y	R	L	S	G	L	T	G	I	L	S	A	D
Template Known Secondary structure		T	T							G	G	G	G				S										T	T	T				.	.																	T				.	.	.	.	.	.	.	.				S	T	T						T	T
Template Predicted Secondary structure																																	.	.																					.	.	.	.	.	.	.	.
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.			.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.									.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	G	D	L	K	G	F	E	F	G	V	F	D	W	H	A	N	G	T	A	T
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		T	N	C	N	V	E	.	R	D	X	T	W	Y	Q	Y	Q	D	G	A	I	V	P
Template Known Secondary structure		T	T		B			.										T	T
Template Predicted Secondary structure								.
Template SS confidence
		552	.	.	.	.	.		.	.	560	.	.	.	.	.	.	.	.	.	570	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions