Job Description P0AD96 Confidence 98.92% Date Thu Jan 5 11:20:22 GMT 2012 Rank 45 Aligned Residues 223 % Identity 11% Template d2fvya1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 0.92

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		D	I	K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	.	V	I	G	H	L	C	S	S
Query Conservation																																																																									.
Alig confidence											.	.																					.	.	.	.	.	.	.			.																															.
Template Conservation											.	.																					.	.	.	.	.	.	.			.
Template Sequence		D	T	R	I	G	V	T	I	Y	.	.	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	.	.	.	.	.	.	.	A	P	.	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A
Template Known Secondary structure										S	.	.		T	T	S																T	.	.	.	.	.	.	.		T	.	T									T	T															T	T		S							S	S	G	G
Template Predicted Secondary structure											.	.																					.	.	.	.	.	.	.			.
Template SS confidence
		2	.	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30								.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.												.	.	.	.	.	.	.	170
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	.	.	.	.	.	.	.	.	.	.	.	R	I	A	I	V	H	D	K	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		A	A	G	T	V	I	E	K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G
Template Known Secondary structure		G										T	T	T							S	S									T		T	T																											G	G	G		T	T		S	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.
Query SS confidence																																							.	.	.	.	.
Query Sequence		Q	Q	Y	G	E	G	L	A	R	A	V	Q	D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	T	.	.	.	.	.	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	F
Query Conservation																																							.	.	.	.	.
Alig confidence																																							.	.	.	.	.
Template Conservation
Template Sequence		H	P	D	A	E	A	R	T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I	P
Template Known Secondary structure																			T	T												T	T														T	S	T	T	G	G	G							S	S														T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		246	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	P	E	G	V	A	N	V	S	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	G	V	D	A	L	P	E	A	L	A
Template Known Secondary structure					S	B
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions