Return to main results Retrieve Phyre Job Id

Job DescriptionP0AD96
Confidence98.92%DateThu Jan 5 11:20:22 GMT 2012
Rank45Aligned Residues223
% Identity11%Templated2fvya1
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution0.92

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  DIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKY. VIGHLCSS
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Template Sequence  DTRIGVTIY. . KYDDNFMSVVRKAIEQDAKA. . . . . . . AP. DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA
Template Known Secondary structure 
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TTST.......
T.T
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SSGG
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   2.......10 .........20.........30 .. .......40.........50.........60.........70.
 
   104.....110.........120.........130.........140.........150.........160.. .......170
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Query Sequence  STQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQ. . . . . . . . . . . RIAIVHDK. .
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Template Sequence  AAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG
Template Known Secondary structure  GTTT

SS


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GGG
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STT
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   72.......80.........90.........100.........110.........120.........130.........140.........150.
 
   171........180.........190.........200....... ..210.........220.........230.........240.....
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Query Sequence  QQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFST. . . . . LVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQF
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Template Sequence  HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIP
Template Known Secondary structure 
TT


TT
TSTTGGG

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   152.......160.........170.........180.........190.........200.........210.........220.........230.
 
   246...250.......
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Query Sequence  MGPEGVANVSLS
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Template Sequence  VFGVDALPEALA
Template Known Secondary structure 
SB

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   232.......240...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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