Job Description P0AD96 Confidence 100.00% Date Thu Jan 5 11:20:22 GMT 2012 Rank 8 Aligned Residues 334 % Identity 15% Template d1qo0a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.25

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	.	G	I	K	Y	V	I	G	H	L	C	S	S	S	T
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		L	I	G	L	L	F	S	E	T	G	V	T	A	D	I	E	R	S	Q	R	Y	G	A	L	L	A	V	E	Q	L	N	R	E	G	G	V	G	G	R	P	I	E	T	L	S	Q	D	P	G	G	D	P	D	R	Y	R	L	C	A	E	D	F	I	R	N	R	G	V	R	F	L	V	G	C	Y	M	S	H	T	R
Template Known Secondary structure									S	S	S	T	T																					T	T		B	T	T	B										T	T																S										S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	K	Q	Q	Y	G	E	G	L	A	R	A	V	Q	D	G	L
Query Conservation
Alig confidence																										.	.	.																											.
Template Conservation																										.	.	.																											.
Template Sequence		K	A	V	M	P	V	V	E	R	A	D	A	L	L	C	Y	P	T	P	Y	E	G	F	E	.	.	.	Y	S	P	N	I	V	Y	G	G	P	A	P	N	Q	N	S	A	P	L	A	A	Y	L	I	R	H	.	Y	G	E	R	V	V	F	I	G	S	D	Y	I	Y	P	R	E	S	N	H	V	M	R	H	L	Y
Template Known Secondary structure												T							S							.	.	.			T	T					S			G	G	G	T												.	S		S								S	S
Template Predicted Secondary structure																										.	.	.																											.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																	.	.																																													.	.
Query SS confidence																	.	.																																													.	.
Query Sequence		K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	.	.	G	E	K	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	.	.	F	M	G	P	E	G	V	A	N	V	S	L	S	N	I	A	G
Query Conservation																	.	.																																													.	.
Alig confidence																	.	.																																													.	.
Template Conservation
Template Sequence		R	Q	H	G	G	T	V	L	E	E	I	Y	I	P	L	Y	P	S	D	D	D	L	Q	R	A	V	E	R	I	Y	Q	A	R	A	D	V	V	F	S	T	V	V	G	T	G	T	A	E	L	Y	R	A	I	A	R	R	Y	G	D	G	R	R	P	P	I	A	S	L	T	T	S	E	A	E	V	A	K	M	E	S
Template Known Secondary structure			T	T	T											S	S																	T		S								S	T	T														S	S								S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																	.																				.	.																								.	.
Query SS confidence																	.																				.	.																								.	.
Query Sequence		E	S	A	E	G	L	L	V	T	K	P	K	N	Y	D	.	Q	V	P	A	N	K	P	I	V	D	A	I	K	A	K	K	Q	D	P	.	.	S	G	A	F	V	W	T	T	Y	A	A	L	Q	S	L	Q	A	G	L	N	Q	S	D	.	.	D	P	A	E	I	A	K	Y	L	K	A	N	S	V	D	T	V	M
Query Conservation																	.																				.	.																								.	.
Alig confidence																	.																				.	.																								.	.
Template Conservation
Template Sequence		D	V	A	E	G	Q	V	V	V	A	P	Y	F	S	S	I	D	T	P	A	S	R	A	F	V	Q	A	C	H	G	F	F	P	E	N	A	T	I	T	A	W	A	E	A	A	Y	W	Q	T	L	L	L	G	R	A	A	Q	A	A	G	N	W	R	V	E	D	V	Q	R	H	L	Y	D	I	D	I	D	A	P	Q
Template Known Secondary structure					T	T						S			T	T			S														S		T	T																									T	S											S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	L	T	W	D	E	K	G	D	L	K	G	F	E	F	G	V	F	D	W	H	A	N	G	T	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	V	R	V	E	R	Q	N	N	H	S	R	L	S	S	R	I	A	E	I	D	A	R	G	V	F	Q
Template Known Secondary structure								T	T	T	S	B			B									T	T	S
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions