Job Description P0AD96 Confidence 98.98% Date Thu Jan 5 11:20:22 GMT 2012 Rank 41 Aligned Residues 224 % Identity 9% Template d1gcaa_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.70

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		E	D	I	K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	V	.	I	G	H	L	C	S
Query Conservation																																																																											.
Alig confidence												.	.																					.	.	.	.	.	.	.			.																																.
Template Conservation												.	.																					.	.	.	.	.	.	.			.
Template Sequence		A	D	T	R	I	G	V	T	I	Y	.	.	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	K	D	G	K	S	.	.	.	.	.	.	.	A	P	.	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P
Template Known Secondary structure											S	.	.		T	T																	T	.	.	.	.	.	.	.	S	T	.	T									T	T															T	T		S							S	S	G
Template Predicted Secondary structure												.	.																					.	.	.	.	.	.	.			.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30								.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.												.	.	.	.	.			.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.						.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.						.	.
Query Sequence		S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	.	.	.	.	.	.	.	.	.	.	.	R	I	A	I	V	.	.	H	D
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.						.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.						.	.
Template Conservation
Template Sequence		A	A	A	G	T	V	I	E	K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	V	I	Q	G	D	L	I	A	K	H	W	Q	A	N	Q	G	W	D	L	N	K	D	G	K	I	Q	Y	V	L	L	K	G	E	P
Template Known Secondary structure		G	G											T	T							S	S									T		T	T																											G	G	G		T	T		S	S	S									S	T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																				.	.															.	.	.
Query SS confidence																																				.	.															.	.	.
Query Sequence		K	Q	Q	Y	G	E	G	L	A	R	A	V	Q	D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	.	.	D	F	S	T	L	V	A	R	L	K	K	E	N	I	.	.	.	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q
Query Conservation																																				.	.															.	.	.
Alig confidence																																				.	.															.	.	.
Template Conservation
Template Sequence		G	H	P	D	A	E	A	R	T	T	Y	V	V	K	E	L	N	D	K	G	I	Q	T	E	Q	L	A	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	K	S	S	I
Template Known Secondary structure		T																		T	T												T	T														T	S	T	T	G	G	G							S	S														T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		245	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	M	G	P	E	G	V	A	N	V	S	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	F	G	V	D	A	L	P	E	A	L	A
Template Known Secondary structure						S	B
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions