Job Description P0AD96 Confidence 100.00% Date Thu Jan 5 11:20:22 GMT 2012 Rank 10 Aligned Residues 338 % Identity 18% Template c3t0nA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal; PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5 Resolution 2.22 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		L	A	E	D	I	K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	.	N	D	G	I	K	Y	V	I	G	H	L
Query Conservation																																																																						.
Alig confidence																																						.	.																															.
Template Conservation																																						.	.
Template Sequence		A	E	D	T	F	K	V	G	L	I	V	P	X	T	G	G	Q	A	S	T	G	K	Q	I	D	N	A	I	K	L	Y	I	K	K	H	G	.	.	D	T	V	A	G	K	K	I	E	V	I	L	K	D	D	A	A	I	P	D	N	T	K	R	L	A	Q	E	L	I	V	N	D	K	V	N	V	I	A	G	F	G
Template Known Secondary structure			T	T										S	S	S	T	T																				.	.	S			T	T											T	T															T	S			S						S
Template Predicted Secondary structure																																						.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	K	Q	Q	Y	G	E	G	L	A	R	A
Query Conservation
Alig confidence																																			.																									.
Template Conservation																																			.																									.
Template Sequence		I	T	P	A	A	L	A	A	A	P	L	A	T	Q	A	K	V	P	E	I	V	X	A	A	G	T	S	I	I	T	E	R	S	.	P	Y	I	V	R	T	S	F	T	L	A	Q	S	S	I	I	I	G	D	W	A	A	K	N	.	G	I	K	K	V	A	T	L	T	S	D	Y	A	P	G	N	D	A	L	A	F
Template Known Secondary structure		S															T						S	S				G	G	G	G	G	G		.	T	T				S	S																	T	.	T										S	S
Template Predicted Secondary structure																																			.																									.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.				.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		V	Q	D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	.	.	.	F	M	G	P	E	G	V	A	N	V	S	L	S
Query Conservation																																																																		.	.	.
Alig confidence																																																																		.	.	.
Template Conservation
Template Sequence		F	K	E	R	F	T	A	G	G	G	E	I	V	E	E	I	K	V	P	L	A	N	P	D	F	A	P	F	L	Q	R	X	K	D	A	K	P	D	A	X	F	V	F	V	P	A	G	Q	G	G	N	F	X	K	Q	F	A	E	R	G	L	D	K	S	G	I	K	V	I	G	P	G	D	V	X	D	D	D	L	L
Template Known Secondary structure									T	T											S	S	S													S			S								T	T												T	T	G	G	G	T	T							G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																					.																																											.	.	.
Query SS confidence																					.																																											.	.	.
Query Sequence		N	I	A	G	E	S	A	E	G	L	L	V	T	K	P	K	N	Y	D	.	Q	V	P	A	N	K	P	I	V	D	A	I	K	A	K	K	Q	D	P	S	G	A	F	V	W	T	T	Y	A	A	L	Q	S	L	Q	A	G	L	N	Q	S	D	.	.	.	D	P	A	E	I	A	K	Y	L	K	A	N	S	V	D
Query Conservation																					.																																											.	.	.
Alig confidence																					.																																											.	.	.
Template Conservation
Template Sequence		N	S	X	G	D	A	A	L	G	V	V	T	A	H	X	Y	S	A	A	H	P	S	A	X	N	K	E	F	V	A	A	Y	K	K	E	F	G	Q	R	P	G	F	X	A	V	G	G	Y	D	G	I	H	L	V	F	E	A	L	K	K	T	G	G	K	A	D	G	D	S	L	I	A	A	X	K	G	X	K	W	E
Template Known Secondary structure		T	T			G	G	G	T	T						S			T	T			S															S	S																								T	T			S									T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		T	V	M	G	P	L	T	W	D	E	K	G	D	L	K	G	F	E	F	G	V	F	D	W	H	.	.	A	N	G	T	A
Query Conservation																											.	.
Alig confidence																											.	.
Template Conservation
Template Sequence		S	P	R	G	P	I	S	I	D	P	E	T	R	D	I	V	Q	N	I	Y	I	R	K	V	E	K	V	D	G	E	L	Y
Template Known Secondary structure			T	T							T	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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