Job Description P0AD96 Confidence 100.00% Date Thu Jan 5 11:20:22 GMT 2012 Rank 17 Aligned Residues 334 % Identity 16% Template c3snrA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris. Resolution 1.49 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		L	A	E	D	I	K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	.	D	G	I	K	Y	V	I	G	H	L
Query Conservation																																																																							.
Alig confidence																																						.	.	.	.	.	.																												.
Template Conservation																																						.	.	.	.	.	.
Template Sequence		E	T	N	E	I	T	V	G	I	S	V	T	T	T	G	P	A	A	A	L	G	I	P	E	R	N	A	L	E	F	V	V	K	E	I	S	.	.	.	.	.	.	G	H	P	I	K	I	I	V	L	D	D	G	G	D	P	T	A	A	T	T	N	A	R	R	F	V	T	E	S	K	A	D	V	I	X	G	S	S
Template Known Secondary structure															S	S	T	T										G	G	G	G	S		S			T	.	.	.	.	.	.	T											T	T															T	S			S						S
Template Predicted Secondary structure																																						.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	K	Q	Q	Y	G	E	G	L	A	R	A
Query Conservation
Alig confidence																																		.	.																									.
Template Conservation																																		.	.																									.
Template Sequence		V	T	P	P	S	V	A	I	S	N	V	A	N	E	A	Q	I	P	H	I	A	L	A	P	L	P	I	T	P	E	R	A	.	.	K	W	S	V	V	X	P	Q	P	I	P	I	X	G	K	V	L	Y	E	H	X	K	K	N	.	N	V	K	T	V	G	Y	I	G	Y	S	D	S	Y	G	D	L	W	F	N	D
Template Known Secondary structure		S															T						S	S						T	T	T	T	.	.	T	T					S																	T	.	T										S	S
Template Predicted Secondary structure																																		.	.																									.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	F	M	G	P	E	G	V	A	N	V	S	L	S	N	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	K	Q	G	E	A	X	G	L	K	I	V	G	E	E	R	F	A	R	P	D	T	S	V	A	G	Q	A	L	K	L	V	A	A	N	P	D	A	I	L	V	G	A	S	G	T	A	A	A	L	P	Q	T	T	L	R	E	R	G	Y	N	G	L	I	Y	Q	T	H	G	A	A	S	X	D	F	I	R	I	A
Template Known Secondary structure									T	T											T	T		S															S																					T	T			S						G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.										.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.										.	320	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.																						.																									.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.																						.																									.	.	.	.	.	.	.	.	.
Query Sequence		G	E	S	A	E	G	L	L	V	T	K	P	K	.	.	.	.	.	.	.	.	.	N	Y	D	Q	V	P	A	N	K	P	I	V	D	A	I	K	A	K	K	Q	D	.	P	S	G	A	F	V	W	T	T	Y	A	A	L	Q	S	L	Q	A	G	L	N	Q	S	D	.	.	.	.	.	.	.	.	.	D	P	A
Query Conservation															.	.	.	.	.	.	.	.	.																						.																									.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																						.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	S	A	E	G	V	L	X	A	S	G	P	V	X	D	P	E	G	Q	D	D	T	A	L	T	K	K	P	G	X	A	L	V	K	V	Y	E	E	K	Y	G	P	S	S	R	S	Q	F	A	G	H	S	Y	D	A	F	K	V	L	E	R	V	V	P	V	A	L	K	K	A	K	P	G	T	Q	E	F	R	E
Template Known Secondary structure		G	G	G	G	T	T							G	G	G		S	T	T	S		T	T		T	T																	T	T																													T	T	S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure												.																	.	.
Query SS confidence												.																	.	.
Query Sequence		E	I	A	K	Y	L	K	A	N	S	.	V	D	T	V	M	G	P	L	T	W	D	E	K	G	D	L	.	.	K	G	F	E	F	G	V	F	D	W	H	A	N	G	T	A	T
Query Conservation												.																	.	.
Alig confidence												.																	.	.
Template Conservation
Template Sequence		A	L	R	E	A	F	L	T	E	K	D	I	A	A	S	Q	G	V	Y	N	F	T	E	T	D	R	Y	G	L	D	D	R	S	R	I	L	L	T	V	K	N	G	K	Y	V	I
Template Known Secondary structure																S	S							S	S		S	S				G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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