Job Description P0AD96 Confidence 100.00% Date Thu Jan 5 11:20:22 GMT 2012 Rank 21 Aligned Residues 336 % Identity 12% Template c3om1A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2); PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution Resolution 1.68 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																										.																					.
Query SS confidence																																										.																					.
Query Sequence		E	D	I	K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	.	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	.	V	A	N	K	V	V	N	D	G	I	K	Y	V	I	G	H	L	C
Query Conservation																																										.																					.
Alig confidence																	.	.	.																							.																					.
Template Conservation																	.	.	.
Template Sequence		S	S	L	R	M	A	A	I	L	D	D	Q	T	V	C	.	.	.	G	R	G	E	R	L	A	L	A	L	A	R	E	Q	I	N	G	I	I	E	V	P	A	K	A	R	V	E	V	D	I	F	E	L	Q	R	D	S	Q	Y	E	T	T	D	T	M	C	Q	I	L	P	K	G	V	V	S	V	L	G	P	S	S
Template Known Secondary structure												S		S	S	S	.	.	.	S																	S			S	S													S	S														G	G	G			S						S	S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		S	S	S	T	Q	P	A	.	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	K	Q	Q	Y	G	E	G	L	A	R	A
Query Conservation									.
Alig confidence									.																																														.
Template Conservation																																																							.
Template Sequence		S	P	A	S	A	S	T	V	S	H	I	C	G	E	K	E	I	P	H	I	K	V	G	P	E	E	T	P	R	L	Q	Y	L	R	F	A	S	V	S	L	Y	P	S	N	E	D	V	S	L	A	V	S	R	.	I	L	K	S	F	N	Y	P	S	A	S	L	I	C	A	K	A	E	C	L	L	R	L	E	E	L
Template Known Secondary structure																	T							S				S	S			G	G	G	G	G	G					S													.					T	T	S								S	S	T	T					T
Template Predicted Secondary structure																																																							.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	F	M	G	P	E	G	V	A	N	V	S	L	S	N	I	A
Query Conservation
Alig confidence															.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		V	R	G	F	L	I	S	K	E	T	L	S	V	.	.	.	.	R	M	L	D	D	R	D	P	T	P	L	L	K	E	I	R	D	D	K	V	S	T	I	I	I	D	A	N	A	S	I	S	H	L	V	L	R	K	A	S	E	L	G	M	T	S	A	F	Y	K	Y	I	L	T	T	M	D	F	P	I	L	H	L
Template Known Secondary structure								S	S	S					.	.	.	.																			T								S															T	T	T	T	S	T	T								T	T	G	G	G
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		261	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.									.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.																											.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																											.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	S	A	E	G	.	.	L	L	V	T	K	P	K	N	Y	D	Q	V	P	A	N	K	P	I	V	D	A	I	K	A	K	K	.	.	.	.	.	.	.	.	Q	D	P	S	G	A	F	V	W	T	T	Y	A	A	L	Q	S	L	Q	A	G	L	N	Q	S	D	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.																											.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																											.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	I	V	E	D	S	S	N	I	L	G	F	S	M	F	N	T	S	H	P	F	Y	P	E	F	V	R	S	L	N	M	S	W	R	E	N	C	E	A	S	T	Y	P	G	P	A	L	S	A	A	L	M	F	D	A	V	H	V	V	V	S	A	V	R	E	L	N	R	S	Q	E	I	G	V	K	P	L	A	C
Template Known Secondary structure		T	T	T			T	T											T	T	S	T	T																	S	S	S																											T	T	T	S									T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
									319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360						.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																											.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																											.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	P	A	E	I	A	K	Y	L	K	A	N	S	V	D	T	V	M	G	P	L	T	W	D	E	K	G	D	L	K	G	F	E	F	G	V	F	D	W	H	A	N	.	.	.	.	.	G	T	A	T	D	A	K
Query Conservation		.	.	.	.	.	.	.																																											.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																											.	.	.	.	.
Template Conservation
Template Sequence		T	S	A	N	I	W	P	H	G	T	S	L	M	N	Y	L	R	M	V	E	Y	D	G	L	T	G	R	V	E	F	N	S	K	G	Q	R	T	N	Y	T	L	R	I	L	E	K	S	R	Q	G	H	R	E	I	G	V	W	Y	S	N	R
Template Known Secondary structure		T						T	T										T						T	T					B		T	T	S		B		S										T	T										S
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions