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Job DescriptionP0AD96
Confidence98.99%DateThu Jan 5 11:20:22 GMT 2012
Rank40Aligned Residues254
% Identity12%Templatec3ma0A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90....... ..100..
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Query Sequence  EDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVI. GHLCS
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Template Sequence  KEVKIGMAID. . DLRLERWQKDRDIFVKKAESLG. . . . . . . . . AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG
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   1........10 .........20.........30.. .......40.........50.........60.........
 
   103......110.........120.........130.........140.........150.........160....... ..170.........180
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Query Sequence  SSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIV. . HDKQQYGEGLARA
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Template Sequence  QVLSNVVKEAKQEGIKVLAYDRMINDA. . . . . DIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAG
Template Known Secondary structure  TS
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   70.........80.........90...... ...100.........110.........120.........130.........140....
 
   181........ 190.........200... ......210......... 220.........230.........240.........250...
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Query Sequence  VQDGLKKGN. . . . ANVVFFDGITAGEK. . DFSTLVARLKKENIDF. VYYGGYHPEMGQILRQARAAGLKTQFMGPEGVAN
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Template Sequence  QMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDAD
Template Known Secondary structure  TTS
GGG
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SSTTT
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   145....150.........160.........170.........180.........190.........200.........210.........220....
 
   254.....260.........270.........280.........290......
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Query Sequence  VSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPS
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Template Sequence  LAGIKRIAA. . . GTQTMTVYKPITLLANTAAEIAVELGNGQEP
Template Known Secondary structure  ...TSS


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   225....230... ......240.........250.........260....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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