Job Description P0AD96 Confidence 98.85% Date Thu Jan 5 11:20:22 GMT 2012 Rank 48 Aligned Residues 218 % Identity 16% Template c3ksmA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	.	.	Y	V	I	G	H	L	C	S	S	S
Query Conservation																																																																						.	.
Alig confidence									.	.																						.	.	.	.	.	.	.																																.	.
Template Conservation									.	.																						.	.	.	.	.	.	.
Template Sequence		K	L	L	L	V	L	K	.	.	G	D	S	N	A	Y	W	R	Q	V	Y	L	G	A	Q	K	A	A	D	E	A	.	.	.	.	.	.	.	G	V	T	L	L	H	R	S	T	K	D	D	G	D	I	A	G	Q	I	Q	I	L	S	Y	H	L	S	Q	A	P	P	D	A	L	I	L	A	P	N	S	A	E	D
Template Known Secondary structure								S	.	.		S	S	S	T																	.	.	.	.	.	.	.	T									S	S	T	T																S			S							S	S	T	T	T
Template Predicted Secondary structure									.	.																						.	.	.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.								.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.														.	.
Query SS confidence																																																									.	.	.														.	.
Query Sequence		T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	.	.	.	K	P	Q	R	I	A	I	V	H	D	K	Q	Q	.	.	Y	G	E	G	L	A	R
Query Conservation																																																									.	.	.														.	.
Alig confidence																											.	.	.	.	.																										.	.	.														.	.
Template Conservation																											.	.	.	.	.
Template Sequence		L	T	P	S	V	A	Q	Y	R	A	R	N	I	P	V	L	V	V	D	S	D	L	A	G	D	.	.	.	.	.	A	H	Q	G	L	V	A	T	D	N	Y	A	A	G	Q	L	A	A	R	A	L	L	A	T	L	D	L	S	K	E	R	N	I	A	L	L	R	L	R	A	G	N	A	S	T	D	Q	R	E	Q
Template Known Secondary structure		T										T	T							S	S			S	S	S	.	.	.	.	.		S	S																						S		T	T	S								B			T	T
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		A	V	Q	D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	.	.	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	F	M	G	P	E	G	V	A	N	V	S	L	S
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		G	F	L	D	V	L	R	K	H	D	K	I	R	I	I	A	A	P	Y	A	G	D	D	R	G	A	A	R	S	E	X	L	R	L	L	K	E	T	P	T	I	D	G	L	F	T	P	N	E	S	T	T	I	G	A	L	V	A	I	R	Q	S	G	X	S	K	Q	F	G	F	I	G	F	D	Q	T	E	E	L	E
Template Known Secondary structure								T	T		T	T								B			S	S																S									S														T	T		T	T	S	S						S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		258
Predicted Secondary structure
Query SS confidence
Query Sequence		N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		266

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions