Job Description P0AD96 Confidence 100.00% Date Thu Jan 5 11:20:22 GMT 2012 Rank 3 Aligned Residues 339 % Identity 40% Template c3ip5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine Resolution 1.35 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	V	I	A	V	G	A	P	L	T	G	P	N	A	A	F	G	A	Q	I	Q	K	G	A	E	Q	A	A	K	D	I	N	A	A	G	G	I	N	G	E	Q	I	K	I	V	L	G	D	D	V	S	D	P	K	Q	G	I	S	V	A	N	K	F	V	A	D	G	V	K	F	V	V	G	H	F	N	S	G	V
Template Known Secondary structure												S	S	T	T																					T	T		B	T	T	B										T	T															T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	K	Q	Q	Y	G	E	G	L	A	R	A	V	Q	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	P	A	S	E	V	Y	A	E	N	G	I	L	E	I	T	P	A	A	T	N	P	V	F	T	E	R	G	L	W	N	T	F	R	T	C	G	R	D	D	Q	Q	G	G	I	A	G	K	Y	L	A	D	H	F	K	D	A	K	V	A	I	I	H	D	K	T	P	Y	G	Q	G	L	A	D	E	T	K	K	A
Template Known Secondary structure												T	T						S	S				G	G	G	G	S	S			T	T				S	S																			T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	F	M	G	P	E	G	V	A	N	V	S	L	S	N	I	A	G	E	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	A	A	G	V	T	E	V	M	Y	E	G	V	N	V	G	D	K	D	F	S	A	L	I	S	K	M	K	E	A	G	V	S	I	I	Y	W	G	G	L	H	T	E	A	G	L	I	I	R	Q	A	A	D	Q	G	L	K	A	K	L	V	S	G	D	G	I	V	S	N	E	L	A	S	I	A	G	D	A	V
Template Known Secondary structure					T	T				S							T	T														T	T								S															T	T									G	G	G		S	T							G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		E	G	L	L	V	T	K	P	K	N	Y	D	Q	V	P	A	N	K	P	I	V	D	A	I	K	A	K	K	Q	D	P	S	G	A	F	V	W	T	T	Y	A	A	L	Q	S	L	Q	A	G	L	N	Q	S	D	.	.	D	P	A	E	I	A	K	Y	L	K	A	N	S	V	D	T	V	M	G	P	L	T	W	D
Query Conservation																																																								.	.
Alig confidence																												.																												.	.
Template Conservation																												.
Template Sequence		E	G	T	L	N	T	F	G	P	D	P	T	L	R	P	E	N	K	E	L	V	E	K	F	K	A	.	A	G	F	N	P	E	A	Y	T	L	Y	S	Y	A	A	M	Q	A	I	A	G	A	A	K	A	A	G	S	V	E	P	E	K	V	A	E	A	L	K	K	G	S	F	P	T	A	L	G	E	I	S	F	D
Template Known Secondary structure		T	T						S			G	G	G		G	G	G										.	T	T					T	T																			T																B			T	T	S	S	B		B
Template Predicted Secondary structure																												.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		E	K	G	D	L	K	G	F	E	F	G	V	F	D	W	H	.	.	A	N	G	T	A	T
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		E	K	G	D	P	K	L	P	G	Y	V	M	Y	E	W	K	K	G	P	D	G	K	F	T
Template Known Secondary structure		T	T	S		B														T	T	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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