Job Description P0AD96 Confidence 97.06% Date Thu Jan 5 11:20:22 GMT 2012 Rank 99 Aligned Residues 202 % Identity 9% Template c3huuC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:transcription regulator like protein; PDBTitle: crystal structure of transcription regulator like protein from2 staphylococcus haemolyticus Resolution 1.95 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	I	K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S
Query Conservation
Alig confidence																																							.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.
Template Sequence		K	T	L	T	I	G	L	I	Q	K	S	S	A	P	E	I	R	Q	N	P	F	N	S	D	V	L	N	G	I	N	Q	A	C	N	V	R	G	.	.	.	.	.	.	Y	S	T	R	M	T	V	S	E	N	S	G	D	L	Y	H	E	V	K	T	M	I	Q	S	K	S	V	D	G	F	I	L	L	Y	S	L	K
Template Known Secondary structure											S								T	S																	T	T	.	.	.	.	.	.									S	S														T	T			S					S	S		B	T
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.							.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	K	Q	Q	.	Y	G	E	G	L	A	R	A	V	Q
Query Conservation																																																																							.
Alig confidence			.																								.	.	.	.	.	.																																							.
Template Conservation			.																								.	.	.	.	.	.
Template Sequence		D	.	D	P	I	E	H	L	L	N	E	F	K	V	P	Y	L	I	V	G	K	S	L	N	Y	.	.	.	.	.	.	E	N	I	I	H	I	D	N	D	N	I	D	A	A	Y	Q	L	T	Q	Y	L	Y	H	L	G	H	R	H	I	L	F	L	Q	E	S	G	H	Y	A	V	T	E	D	R	S	V	G	F	K
Template Known Secondary structure		T	.										T	T							S				S		.	.	.	.	.	.	S	S																							T										S	S		B
Template Predicted Secondary structure			.																								.	.	.	.	.	.
Template SS confidence
		93		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q
Query Conservation
Alig confidence										.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.
Template Sequence		Q	Y	C	D	D	V	K	I	.	.	.	.	.	.	S	N	D	C	V	V	I	K	S	M	N	D	L	R	D	F	I	K	Q	Y	M	P	S	V	I	I	T	S	D	V	M	L	N	M	Q	L	L	N	V	L	Y	E	Y	Q	L	R	I	P
Template Known Secondary structure							T	T		.	.	.	.	.	.									S									T	T				S					S	S														T	T			T	T
Template Predicted Secondary structure										.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.							.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions