Job Description P0AD96 Confidence 98.65% Date Thu Jan 5 11:20:22 GMT 2012 Rank 56 Aligned Residues 234 % Identity 14% Template c3h75A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens Resolution 1.60 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	.	.	Y	V	I	G	H	L	C	S	S	S
Query Conservation																																																																						.	.
Alig confidence																	.																.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																	.																.	.	.	.	.	.	.	.	.
Template Sequence		S	V	V	F	L	N	P	G	N	S	T	E	T	F	W	.	V	S	Y	S	Q	F	X	Q	A	A	A	R	D	L	G	.	.	.	.	.	.	.	.	.	L	D	L	R	I	L	Y	A	E	R	D	P	Q	N	T	L	Q	Q	A	R	E	L	F	Q	G	R	D	K	P	D	Y	L	X	L	V	N	E	Q	Y	V
Template Known Secondary structure									S		T	T					.															T	.	.	.	.	.	.	.	.	.									T	T															S	S	S			S								S	S
Template Predicted Secondary structure																	.																.	.	.	.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.										.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.							.	.	.	.	.	.			.	170	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.							.	.
Query SS confidence																																																												.	.	.	.	.	.							.	.
Query Sequence		T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	.	.	.	.	.	.	R	I	A	I	V	H	.	.	D	K	Q	Q	Y	G	E	G
Query Conservation																																																												.	.	.	.	.	.							.	.
Alig confidence																										.	.	.	.																															.	.	.	.	.	.							.	.
Template Conservation																										.	.	.	.
Template Sequence		A	P	Q	I	L	R	L	S	Q	G	S	G	I	K	L	F	I	V	N	S	P	L	T	L	.	.	.	.	D	Q	R	W	I	G	S	X	V	G	D	D	E	E	A	G	Y	R	X	L	K	E	L	L	H	K	L	G	P	V	P	A	G	H	G	I	E	L	L	A	F	S	G	L	K	V	T	P	A	A	Q	L
Template Known Secondary structure										T	T	S									S				T	.	.	.	.	T	T																														S	S										S		T	T	S
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																													.																	.																								.	.
Query SS confidence																													.																	.																								.	.
Query Sequence		L	A	R	A	V	Q	D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	.	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	.	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	.	.	T	Q	F	M	G	P	E	G	V	A
Query Conservation																													.																	.																								.	.
Alig confidence																													.																	.																								.	.
Template Conservation
Template Sequence		R	E	R	G	L	R	R	A	L	A	E	H	P	Q	V	H	L	R	Q	L	V	Y	G	E	W	N	R	E	R	A	Y	R	Q	A	Q	Q	L	L	K	R	Y	P	K	T	Q	L	V	W	S	A	N	D	E	X	A	L	G	A	X	Q	A	A	R	E	L	G	R	K	P	G	T	D	L	L	F	S	G	V	N	S
Template Known Secondary structure														T	T										T	T																	T	T							S	S														T	T			B	T	T	T	B						S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	S	L	S	N	I	A	G	E	S	A	E	G	L	L	V	T	K	P	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	E	A	L	Q	A	L	I	D	G	K	L	S	V	L	E	A	G	H	F	T
Template Known Secondary structure												T	S	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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