Phyre 2 alignment of P0AD96 with c3h6hB

Job Description P0AD96
Confidence 100.00% Date Thu Jan 5 11:20:22 GMT 2012

Rank 24 Aligned Residues 337

% Identity 14% Template c3h6hB_

PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form

Resolution 2.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.													.
Query SS confidence																																											.													.
Query Sequence	L	A	E	D	I	K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	.	G	N	K	L	Q	I	V	K	Y	D	D	A	.	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	V	I	G	H
Query Conservation																																											.													.
Alig confidence																			.	.																							.													.
Template Conservation																			.	.
Template Sequence	T	T	H	V	L	R	F	G	G	I	F	E	Y	V	E	S	G	P	.	.	M	G	A	E	E	L	A	F	R	F	A	V	N	T	I	N	R	N	R	T	L	L	P	N	T	T	L	T	Y	D	T	Q	K	I	N	L	Y	D	S	F	E	A	S	K	K	A	C	D	Q	L	S	L	G	V	A	A	I	F	G	P
Template Known Secondary structure															T	T	S	S	.	.																			S	S	S	S	S	S												T	T																		S
Template Predicted Secondary structure																			.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.

	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	K	Q	Q	Y	G	E	G	L	A	R
Query Conservation
Alig confidence																																		.																					.																		.
Template Conservation																																		.																					.																		.
Template Sequence	S	H	S	S	S	A	N	A	V	Q	S	I	C	N	A	L	G	V	P	H	I	Q	T	R	W	K	H	Q	V	S	D	N	K	.	D	S	F	Y	V	S	L	Y	P	D	F	S	S	L	S	R	A	I	L	D	.	L	V	Q	F	F	K	W	K	T	V	T	V	V	Y	D	D	S	.	T	G	L	I	R	L	Q
Template Known Secondary structure	S	S														T	T			B				S						S	S			.			S					S	B		T	T	T								.					T	T		S							S	S	T	.						S
Template Predicted Secondary structure																																		.																					.																		.
Template SS confidence
	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.

	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	V	Q	D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	F	M	G	P	E	G	V	A	N	V	S	L	S	N	I
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence	E	L	I	K	A	P	S	R	Y	N	L	R	L	K	.	I	R	Q	L	P	A	D	T	K	D	A	K	P	L	L	K	E	M	K	R	G	K	E	F	H	V	I	F	D	C	S	H	E	M	A	A	G	I	L	K	Q	A	L	A	M	G	M	M	T	E	Y	Y	H	Y	I	F	T	T	L	D	L	F	A	L	D
Template Known Secondary structure				T	G	G	G	T	S	S					.						S	S	G	G	G											T	T								S																T			S	T	T								S		G	G	G	B
Template Predicted Secondary structure															.
Template SS confidence
	156	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.								.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.																										.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.																										.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	G	E	S	A	E	G	L	.	.	L	V	T	K	P	K	N	Y	D	Q	V	P	A	N	K	P	I	V	D	A	I	K	A	K	K	.	.	.	.	.	.	.	Q	D	P	S	G	A	F	V	W	T	T	Y	A	A	L	Q	S	L	Q	A	G	L	N	Q	S	D	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.																										.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.																										.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	E	P	Y	R	Y	S	G	V	N	M	T	G	F	R	I	L	N	T	E	N	T	Q	V	S	S	I	I	E	K	W	S	M	E	R	L	P	D	S	G	L	L	D	G	F	M	T	T	D	A	A	L	M	Y	D	A	V	H	V	V	S	V	A	V	Q	Q	F	P	Q	M	T	V	S	S	L	Q	C	N	R	H
Template Known Secondary structure		T	T	T	T	T	T	T									S		T	T	S												T	T				T	T		B		S	S																					T	T		T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

					319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure	.	.	.	.																										.
Query SS confidence	.	.	.	.																										.
Query Sequence	.	.	.	.	D	P	A	E	I	A	K	Y	L	K	A	N	S	V	D	T	V	M	G	P	L	T	W	D	E	.	K	G	D	L	K	G	F	E	F	G	V	F	D	W	H	A	N	G	T	A	T
Query Conservation	.	.	.	.																										.
Alig confidence	.	.	.	.																										.
Template Conservation
Template Sequence	K	P	W	R	F	G	T	R	F	M	S	L	I	K	E	A	H	W	E	G	L	T	G	R	I	T	F	N	K	T	N	G	L	R	T	D	F	D	L	D	V	I	S	L	K	E	E	G	L	E	K
Template Known Secondary structure				S	S										T						T	T							T	T	T	S	S	B												T	T
Template Predicted Secondary structure
Template SS confidence
	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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