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Job DescriptionP0AD96
Confidence98.50%DateThu Jan 5 11:20:22 GMT 2012
Rank64Aligned Residues221
% Identity11%Templatec3g1wB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans
Resolution2.02 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90..... ....100.....
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Query Sequence  KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKY. VIGHLCSSST
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Template Sequence  TYXXITFQSGX. . DYWKRCLKGFEDAAQAL. . . . . . . NVTV. EYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVEL
Template Known Secondary structure  STTS..T.......T
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   44.....50.... .....60.........70. .... ....80.........90.........100.........110...
 
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Query Sequence  QPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVH. . DKQQYGEGLARAVQD
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Template Sequence  TDTINKAVDAGIPIVLFDSGAPDS. . . . . HAHSFLGTNNYNAGXNAAYKXAELLDGEGEVAVITLPNQLNHQERTTGFKE
Template Known Secondary structure  TT

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   114.....120.........130....... ..140.........150.........160.........170.........180........
 
   184.....190.........200.... .....210.........220.........230.........240.........250.........260
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Query Sequence  GLKKGNANVVFFDGITAGEKD. . . FSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIA
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Template Sequence  TLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLV
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TT
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   189190.........200.........210.........220.........230.........240.........250.........260........
 
   261.
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Query Sequence  GE
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Template Sequence  DE
Template Known Secondary structure  T
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   269270
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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