Job Description P0AD96 Confidence 100.00% Date Thu Jan 5 11:20:22 GMT 2012 Rank 15 Aligned Residues 336 % Identity 16% Template c3eafA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		D	I	K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	.	.	.	.	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	V	I	G	H	L
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.
Template Conservation
Template Sequence		T	I	N	V	G	L	L	V	D	E	T	G	P	T	S	D	V	G	K	G	Y	S	L	G	A	E	L	A	F	K	Y	F	N	E	K	G	I	Y	T	K	D	G	V	R	V	N	I	N	Y	I	K	R	D	Y	A	Y	N	P	T	T	A	E	E	Y	Y	R	E	F	R	D	R	Y	G	V	I	A	I	I	G	W
Template Known Secondary structure											S	S	S	T	T																										T	T														T	T															T	T			S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	.	D	K	Q	Q	Y	G	E	G	L	A	R
Query Conservation																																																																						.
Alig confidence																															.	.	.																																					.
Template Conservation																															.	.	.
Template Sequence		G	T	A	D	T	E	K	L	S	D	Q	V	D	T	D	K	I	T	Y	I	S	A	S	Y	S	A	K	L	L	.	.	.	V	K	P	F	N	F	Y	P	A	P	D	Y	S	T	Q	A	C	S	G	L	A	F	L	A	S	E	F	G	Q	G	K	L	A	L	A	Y	D	S	K	V	A	Y	S	R	S	P	I	G
Template Known Secondary structure																	T						S				G	G	G	T	.	.	.	T	S	T	T				S	S																				S									T	T						T	T
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		A	V	Q	D	G	L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	.	.	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q	F	M	G	P	E	G	V	A	N	V	S	L	S
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		A	I	K	K	A	A	P	S	L	G	L	Q	V	V	G	D	Y	D	L	P	L	R	A	T	E	A	D	A	E	R	I	A	R	E	X	L	A	A	D	P	D	Y	V	W	C	G	N	T	I	S	S	C	S	L	L	G	R	A	X	A	K	V	G	L	D	A	F	L	L	T	N	V	W	G	F	D	E	R	S	P
Template Known Secondary structure							T	G	G	G	T											T	T															T	T			S						S																T									G	G	G		S	T	T
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.				.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.								.	320	.	.	.
Predicted Secondary structure																			.	.	.	.																							.	.	.																							.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.																							.	.	.																							.	.	.	.	.	.	.
Query Sequence		N	I	A	G	E	S	A	E	G	L	L	V	T	K	P	K	N	.	.	.	.	Y	D	Q	V	P	A	N	K	P	I	V	D	A	I	K	A	K	K	Q	D	P	S	.	.	.	G	A	F	V	W	T	T	Y	A	A	L	Q	S	L	Q	A	G	L	N	Q	S	D	.	.	.	.	.	.	.	D	P	A	E	I
Query Conservation																			.	.	.	.																							.	.	.																							.	.	.	.	.	.	.
Alig confidence																			.	.	.	.																							.	.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	I	G	E	G	G	Y	G	K	V	F	G	I	S	P	F	I	Y	P	X	F	G	Q	D	V	E	G	I	Q	T	I	F	E	A	A	R	X	N	G	V	S	E	D	Q	I	N	L	R	V	V	Q	G	F	V	N	V	W	L	L	I	K	A	I	E	S	V	T	S	Q	D	L	Q	E	R	G	G	E	A	L
Template Known Secondary structure						G	G	G	T	T	S						S	B			G	G	G		T	T														T	T			G	G	G																				T	T	S									T
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		324	.	.	.	.	.	330	.	.	.			.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure												.	.					.
Query SS confidence												.	.					.
Query Sequence		A	K	Y	L	K	A	N	S	V	D	.	.	T	V	M	G	.	P	L	T	W	D	E	K	G	D	L	K	G	F	E	F	G	V	F	D	W	H	A	N	G	T	A
Query Conservation												.	.					.
Alig confidence												.	.					.
Template Conservation
Template Sequence		K	E	A	L	E	A	N	T	F	D	L	G	G	I	T	A	D	T	I	D	Y	E	P	G	F	H	L	A	Y	R	K	V	F	I	I	K	L	G	E	N	G	E	L
Template Known Secondary structure										B		S	T	T		B	S	S		B			B	T	T	B														T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions