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Job DescriptionP0AD96
Confidence98.75%DateThu Jan 5 11:20:22 GMT 2012
Rank52Aligned Residues202
% Identity9%Templatec3dbiA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate
Resolution2.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQ
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Template Sequence  TLGLVVTNTLYHGIYFSELLFHAARXAEE. . . . . . . KGRQL. . LLADGKHSAEEERQAIQYLLDLRCDAIXIYPRFLSVD
Template Known Secondary structure 
TTTTSTT.......TT
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TTSTT
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   63......70.........80.........90. ..... ...100.........110.........120.........130...
 
   107..110.........120.........130.........140.........150.........160......... 170.........180....
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Query Sequence  PASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHD. . KQQYGEGLARAVQDG
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Template Sequence  EIDDIIDAHSQPIXVLNRRLRK. . . . . . NSSHSVWCDHKQTSFNAVAELINA. GHQEIAFLTGSXDSPTSIERLAGYKDA
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SS
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SS......SGGG
B
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TT
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   134.....140.........150..... ....160.........170......... 180.........190.........200......
 
   185....190.........200...... ...210.........220.........230.........240....
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Query Sequence  LKKGNANVVFFDGITAGEKDFS. . . TLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQ
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Template Sequence  LAQHGIALNEKLIANGKWTPASGAEGVEXLLERGAKFSALVASNDDXAIGAXKALHERGVAVP
Template Known Secondary structure  TT



GGG


SSTT


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TT
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   207..210.........220.........230.........240.........250.........260.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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