Job Description P0AD96 Confidence 98.16% Date Thu Jan 5 11:20:22 GMT 2012 Rank 78 Aligned Residues 195 % Identity 13% Template c3ctpB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose Resolution 1.41 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q
Query Conservation
Alig confidence									.	.																							.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation									.	.																							.	.	.	.	.	.	.	.	.																																							.	.
Template Sequence		T	I	G	L	M	V	P	.	.	N	I	S	N	P	F	F	N	Q	M	A	S	V	I	E	E	Y	A	K	N	K	G	.	.	.	.	.	.	.	.	.	Y	T	L	F	L	C	N	T	D	D	D	K	E	K	E	K	T	Y	L	E	V	L	Q	S	H	R	V	A	G	I	I	A	S	R	S	Q	C	E	.	.
Template Known Secondary structure								S	.	.		T	T	S																	T	T	.	.	.	.	.	.	.	.	.									T	T															T	T		S						S				S	.	.
Template Predicted Secondary structure									.	.																							.	.	.	.	.	.	.	.	.																																							.	.
Template SS confidence
		62	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	K	Q	Q	.	Y	G	E	G	L	A	R	A	V	Q	D	G	L
Query Conservation																																																																				.
Alig confidence		.	.	.																			.	.	.	.	.	.	.																																							.
Template Conservation		.	.	.																			.	.	.	.	.	.	.
Template Sequence		.	.	.	D	E	Y	A	N	I	D	I	P	V	V	A	F	E	N	H	I	L	.	.	.	.	.	.	.	D	N	I	I	T	I	S	S	D	N	Y	N	G	G	R	M	A	F	D	H	L	Y	E	K	G	C	R	K	I	L	H	I	K	G	P	E	V	F	E	A	T	E	L	R	Y	K	G	F	L	D	G	A
Template Known Secondary structure		.	.	.	G	G	G	T	T			S						S	S				.	.	.	.	.	.	.	T	T	S																					T	T			S								T	T
Template Predicted Secondary structure		.	.	.																			.	.	.	.	.	.	.
Template SS confidence
					129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.								.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	.	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		R	A	K	D	L	E	I	D	F	I	E	F	Q	H	D	F	Q	V	K	M	L	E	E	D	I	N	S	M	K	D	I	V	N	Y	D	G	I	F	V	F	N	D	I	A	A	A	T	V	M	R	A	L	K	K	R	G	V	S	I	P
Template Known Secondary structure				T	T									S	S	S			G	G	G	G	G				T	T	G	G	G	G	G	G	S	S					S	S														T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions