Job Description P0AD96 Confidence 97.43% Date Thu Jan 5 11:20:22 GMT 2012 Rank 95 Aligned Residues 182 % Identity 14% Template c3clkB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum Resolution 2.08 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	V	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M
Query Conservation
Alig confidence																		.	.	.	.	.	.	.												.	.	.	.	.	.	.																							.
Template Conservation																		.	.	.	.	.	.	.												.	.	.	.	.	.	.																							.
Template Sequence		N	F	A	Q	Q	I	L	D	G	I	Q	E	E	A	H	K	.	.	.	.	.	.	.	N	G	Y	N	L	I	I	V	Y	E	E	.	.	.	.	.	.	.	Q	K	H	A	L	L	T	A	I	E	R	P	V	X	G	I	L	L	L	S	I	A	.	L	T	D	D	N	L	Q	L	L	Q	S	S	D	V	P	Y
Template Known Secondary structure																T	T	.	.	.	.	.	.	.	T	T										.	.	.	.	.	.	.											S			S						S			.												T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.												.	.	.	.	.	.	.																							.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.								90	.	.	.	.	.	.	.	.	.	100								.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.
Predicted Secondary structure																																																						.	.																								.	.
Query SS confidence																																																						.	.																								.	.
Query Sequence		I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	K	Q	.	.	Q	Y	G	E	G	L	A	R	A	V	Q	D	G	L	K	K	G	N	A	N	V	V	F	.	.	F
Query Conservation																																																						.	.																								.	.
Alig confidence										.	.	.	.	.	.	.																									.													.	.																								.	.
Template Conservation										.	.	.	.	.	.	.																									.
Template Sequence		C	F	L	S	X	G	F	D	.	.	.	.	.	.	.	D	D	R	P	F	I	S	S	D	D	E	D	I	G	Y	Q	A	T	N	L	L	I	N	E	.	G	H	R	Q	I	G	I	A	G	I	D	Q	Y	P	Y	T	G	R	K	R	L	A	G	Y	K	K	A	L	K	E	A	N	I	A	I	N	Q	E	W	I
Template Known Secondary structure					S				S	.	.	.	.	.	.	.	S	S																					T	T	.	T			S					S				S	S																	T	T					G	G	G
Template Predicted Secondary structure										.	.	.	.	.	.	.																									.
Template SS confidence
		145	.	.	.	.	150	.	.								.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	I	T	A	G	E	K	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	G	D	Y	S	Y	T	S	G	E	Q	A	X	K	A	F	G	K	N	T	D	L	T	G	I	I	A	A	S	D	X	T	A	I	G	I	L	N	Q	A	S	S	F	G	I	E	V	P
Template Known Secondary structure						S	S													T	T				S					S	S														T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions