Job Description P77509 Confidence 98.54% Date Thu Jan 5 12:30:08 GMT 2012 Rank 88 Aligned Residues 114 % Identity 22% Template c3thxB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh3; PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp Resolution 2.70 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.									.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.		.
Query SS confidence																																	.	.	.	.	.	.	.	.		.
Query Sequence		D	N	V	N	F	T	L	N	K	G	E	V	R	A	L	L	G	K	N	G	A	G	K	S	T	L	I	R	M	L	T	.	.	.	.	.	.	.	.	G	.	S	E	R	P	D	S	G	D	I	W	I	G	E	T	R	L	E	G	D	E	A	T	L	T	R	R	A	A	E	L	G	V	R	A	V	Y	Q	E	L
Query Conservation																																	.	.	.	.	.	.	.	.		.
Alig confidence																																	.	.	.	.	.	.	.	.		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	N	T	D	L	S	E	D	S	E	R	V	M	I	I	T	G	P	N	M	G	G	K	S	S	Y	I	K	Q	V	A	L	I	T	I	M	A	Q	I	G	S	Y	V	P	A	E	E	A	T	I	G	I	V	D	G	I	F	T	R	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	S								S																							T			B	S	S	S								S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		871	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		S	L	V	E	G	L	T	V	A	E	N	L	C	L	G	Q	W	P	R	R	N	G	M	I	D	Y	L	Q	M	A	Q	D	A	Q	R	C	L	Q	A	L	G	V	D	V	S	P	E	Q	L	V	S	T	L	S	P	A	Q	K	Q	L	V	E	I	A	R	V	M	K	.	.	G	E	P	R	V	V	I	L	D	E
Query Conservation																																																																						.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	M	E	E	L	T	D	T	A	E	I	I	R	K	A	T	S	Q	S	L	V	I	L	D	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																							941	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure															.											.
Query SS confidence															.											.
Query Sequence		P	T	S	S	L	A	S	A	E	V	E	L	V	.	I	S	A	V	K	K	M	S	A	L	.	G	V	A	V	I	Y	V	S	H	R	M	E	E	I	R
Query Conservation															.											.
Alig confidence															.											.
Template Conservation
Template Sequence		L	G	R	G	T	S	T	H	D	G	I	A	I	A	Y	A	T	L	E	Y	F	I	R	D	V	K	S	L	T	L	F	V	T	H	Y	P	P	V	C	E
Template Known Secondary structure		T	T	T	T	S																			T	T									S		G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		968	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions