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Job DescriptionP77509
Confidence100.00%DateThu Jan 5 12:30:08 GMT 2012
Rank7Aligned Residues467
% Identity22%Templatec3pihA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50... ......60....... ..70...
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Query Sequence  VAGNKRYPGVVALDNVNFTLNKGEVRALLGKNGAGKSTLI. . . . . . . . . . . . . RMLTGSERPDSGDI. . . . . . . WIGETR
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Template Sequence  NEIVVKGARVHNLKNITVRIPKNRLVVITGVSGSGKSSLAMDTIYAEGQRRYLESLSTYKKPDVDEIEGLSPAIAIDQKT
Template Known Secondary structure 
SB
STT

SB

TTSSTTSSSTTTTTS





S
ST



S

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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   74.....80......
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Query Sequence  LEGDEATLTRRAA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SHNPRSTVGTVTEIYDYLRVLYARIGKAHCPECGRPLEKKSIDEILQDLFNSFKEGSRIYILAPLVVDRLILETRNEHRI
Template Known Secondary structure 

STT
BTTS
B
TTT

B
B


S
TT







GGG
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   91........100.........110.........120.........130.........140.........150.........160.........170
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                  

 
   
 
  
 
 
     
         
Template Sequence  LDSLELAMREGKGFVEIRNVDTGESKIFSENLMCPVCGIGFPEITPKLFSFNSPYGACPNCHGLGFTFEVDPSLVAIIPY
Template Known Secondary structure  TSTTT

SS
B
TTT






SGGGG
TTSTTTB
TTTTTSS
S




GGG
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   219220.........230.........240.........250.........260.........270.........280.........290........
 
   87..90.
Predicted Secondary structure  ...........................................................................

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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ELGVR
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Template Sequence  RWDRRLSRWVAREIEKRGVSPPEDVKEFILYGDFEGVVPKVQRWHRETEMKEWLEKNFIVQRTCSVCGGRRLNREALSVK
Template Known Secondary structure  TT
TTTT




S
T








TT
TTT
S

B
TTGGG
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   309310.........320.........330.........340.........350.........360.........370.........380........
 
   92.......100.........110.........120.........130... ......140.. .......150.........160....
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Query Sequence  AVYQELSLVEGLTVAENLCLGQWPRRNGMIDYLQMAQDAQRC. . . . . . LQALGVDVS. PEQLVSTLSPAQKQLVEIARVM
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Template Sequence  INGLNIHEFTELSISEELEFLK. NLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQI
Template Known Secondary structure  TTSB.S



TTTTTTTTT
TT
BTTSBGGG

Template Predicted Secondary structure 



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   401........410.........420.. .......430.........440.........450.........460.........470.........
 
   165.... 170.........180.........190.........200.........210.........220.. .......230......
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Query Sequence  KGEPR. . VVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASCATVM. . . . . . RDGQVAGDVMLENT
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Template Conservation   
 
   








 

      
   
  
   
 







   
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Template Sequence  GSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI. RNADHIIDIGPGGGTNGGRVVFQGTVDEL
Template Known Secondary structure  TT

S

TTTT

GGGTTTTT



.T
SSSSGGG
S
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   480.........490.........500.........510.........520......... 530.........540.........550........
 
   237..240.........250.........260.........270.........280.........290.........300..... ....310.....
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Query Sequence  STHHIVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKPKLEDISFTLRRGEVLGIAGLLGAGRSELL. KAIVGLEEYE
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Template Sequence  LKNPDSSLTGEYLSGKRKITVNKTRRLPYASLKIKGVRHNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNL
Template Known Secondary structure  S
TT
SSS




SS



SS
STT

SSSS
STTSST
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   559560.........570.........580.........590.........600.........610.........620.........630........
 
   316...320.........330.........340.......
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Query Sequence  QGEIVINGEKITRPDYGDMLKRGIGYTPENRK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                        .
  
 
 

    

         
 

 

     
          
 
   
   
Template Sequence  LHKTKLPAGEFDSIEGHENIDK. MIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCE
Template Known Secondary structure 








S
GGG

.
S





TT

SSTTSSS

GGGG
TTSTTTB
T
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   639640.........650.........660 .........670.........680.........690.........700.........710.......
 
   348.350.........360.........370.........380.........390...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMTV
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Template Sequence  ACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALE. . . FFKNIPSIKRTLQVLHDVGL
Template Known Secondary structure  TTTTSS

TTS


TTTTTS
B
TTGGG

BTTB
SSB...TTT
TTG
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   718.720.........730.........740.........750.........760.........770.... .....780.........790....
 
   394.....400.........410.........420.... .....430.........440.........450.........460.........470
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Query Sequence  KAASSETPIGTLSGGNQQKVVIGRWVYAASQ. . . ILLLDEPTRGVDIEAKQQIYRIVRELAAEGKSVVFISSEVEELPLV
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Template Sequence  GYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN.
Template Known Secondary structure  GGSBTT

STT

TS


SSSTTTT

TT



TT.
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   795....800.........810.........820.........830.........840.........850.........860.........870...
 
   471...... ..480.......
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Query Sequence  CDRILLL. . . . . . QHGTFSQEFH
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Template Sequence  ADHIIDLGPEGGKEGGYIVATGT
Template Known Secondary structure 
SSSSGGG

S
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   874.....880.........890......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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