Job Description P77509 Confidence 99.65% Date Thu Jan 5 12:30:08 GMT 2012 Rank 71 Aligned Residues 372 % Identity 15% Template c3cmvG_ PDB info PDB header:recombination Chain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures Resolution 4.30 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	T	L	N	K	G	E	V	R	A	L	L	G	K	N	G	A	G	K	S	T	L	I	R	M	L	T	G	S	E	R	P	D	S	G	D	I	W	I	G	E	T	R	L	E	G	D	E	A	T	L	T	R	R	A	A	E	L	G	V	R	A	V	Y	Q	E	L	S	L	V	E	G	L	T	V	A	E	N	L
Query Conservation
Alig confidence																																									.	.	.	.																			.	.
Template Conservation																																									.	.	.	.																			.	.
Template Sequence		A	G	G	L	P	M	G	R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	R	E	G	K	T	C	A	.	.	.	.	F	I	D	A	E	H	A	L	D	P	I	Y	A	R	K	L	G	V	.	.	D	I	D	N	L	L	C	S	Q	P	D	T	G	E	Q	A	L
Template Known Secondary structure		S	S	S			T	T	S							S	T	T	S	S														T	T	T					.	.	.	.				S	S												T		.	.		G	G	G							S
Template Predicted Secondary structure																																									.	.	.	.																			.	.
Template SS confidence
		1053	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.					.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.			1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.																					120	.	.	.	.	.	.	.	.	.	130	.	.	.																					.	.	.	.	.	.	140	.	.		.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		C	L	G	Q	W	P	R	R	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	D	Y	L	Q	M	A	Q	D	A	Q	R	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	A	L	G	V	D	V	S	.	P	E	Q	L	V	S
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		E	I	C	D	A	L	A	R	S	G	A	V	D	V	I	V	V	D	S	V	A	A	L	T	P	K	A	E	I	E	G	L	A	A	R	M	M	S	Q	A	M	R	K	L	A	G	N	L	K	Q	S	N	T	L	L	I	F	I	N	Q	G	G	N	A	L	K	F	Y	A	S	V	R	L	D	I	R	R	I	G	A
Template Known Secondary structure									T	T	S	S									G	G	G											T	T																T	T	T											T	T						S
Template Predicted Secondary structure
Template SS confidence
		1127	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																						.	.																																																							.	.	.	.
Query SS confidence																						.	.																																																							.	.	.	.
Query Sequence		T	L	S	P	A	Q	K	Q	L	V	E	I	A	R	V	M	K	G	E	P	.	.	R	V	V	I	L	D	E	P	T	S	S	L	A	S	A	E	V	E	L	V	I	S	A	V	K	K	M	S	A	L	G	V	A	V	I	Y	V	S	H	R	M	E	E	I	R	R	I	A	S	C	A	T	V	M	.	.	.	.
Query Conservation																						.	.																																																							.	.	.	.
Alig confidence																						.	.											.														.	.	.	.																			.								.	.	.	.
Template Conservation																																		.														.	.	.	.																			.
Template Sequence		V	K	E	G	E	N	V	V	G	S	E	T	R	V	K	V	V	K	N	K	I	A	A	P	F	K	Q	A	E	F	Q	I	.	L	Y	G	E	G	I	N	F	Y	G	E	L	V	.	.	.	.	D	L	G	V	K	E	K	L	I	E	K	A	G	A	W	Y	S	Y	.	K	G	E	K	I	G	Q	G	K	A	N
Template Known Secondary structure					T	T															S	S	S		T	T								.		T	T	T										.	.	.	.						T	T	S	S				T	T					.	T	T
Template Predicted Secondary structure																																		.														.	.	.	.																			.
Template SS confidence
		1231	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.		.	.	.	.	.	.	.	1270	.	.	.	.	.					.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.		.	.	.	.	.	.	1300	.	.	.	.
				223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.													.	.	.	.
Predicted Secondary structure		.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	R	D	G	Q	V	A	G	D	V	M	L	E	N	T	S	T	H	H	I	V	S	L	M	L	G	R	D	H	V	D	I	A	P	V	A	P	Q	E	I	V	D	Q	A	V	L	E	V	R	A	L	R	H	K	P	K	L	E	D	I	S	F	T	.	.	.	.	.	.	.	.	.	.	.	.	L	R	R	G
Query Conservation		.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																																						.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.
Template Sequence		A	T	A	W	L	K	D	N	P	E	T	A	K	E	I	E	K	K	V	R	E	L	L	L	K	Q	K	A	L	A	A	A	L	G	Q	I	E	K	Q	F	G	K	G	S	I	M	R	L	G	E	D	R	S	M	D	.	.	V	E	T	I	S	T	G	S	L	S	L	D	I	A	L	G	A	G	G	L	P	M	G
Template Known Secondary structure							T	T	S																																S	S	T	T					T	T							.	.							S									S	S	S	S			T	T
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		1305	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.			1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	G	I	A	G	L	L	G	A	G	R	S	E	L	L	K	A	I	V	G	L	E	E	Y	E	Q	G	E	I	V	I	N	G	E	K	I	T	R	P	D	Y	G	D	M	L	K	R	G	I	G	Y	T	P	E	N	R	K	E	A	G	I	I	P	W	L	G	V	D	E	N	T	V	L	T	N	R	Q	K
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	R	E	G	K	T	C	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S							S	T	T	S	S														T	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.									.	.	.	.	.	.	440
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.
Query Sequence		I	S	A	N	G	V	L	Q	W	S	T	I	R	R	L	T	E	E	V	M	Q	R	M	T	V	K	A	A	S	S	E	T	P	I	G	T	L	S	G	G	N	Q	Q	K	V	V	I	G	R	W	V	Y	A	A	S	Q	I	L	L	L	D	E	P	T	R	.	.	.	.	.	.	.	.	G	V	D	I	E	A	K
Query Conservation																																																																			.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.													.	.	.																														.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.													.	.	.
Template Sequence		I	D	A	E	H	A	L	D	P	I	Y	A	R	K	L	.	.	.	.	.	.	G	V	D	I	D	N	L	L	C	S	Q	P	.	.	.	D	T	G	E	Q	A	L	E	I	C	D	A	L	A	R	S	G	A	V	D	V	I	V	V	D	S	V	A	A	L	T	P	K	A	E	I	E	G	L	A	A	R	M	M
Template Known Secondary structure				S	S												.	.	.	.	.	.	T			G	G	G							.	.	.	S														T	T	S										G	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.													.	.	.
Template SS confidence
		2093	.	.	.	.	.	.	2100	.	.	.	.	.	.	.							.	.	2110	.	.	.	.	.	.	.	.	.				2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.		.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		Q	Q	I	Y	R	I	V	R	E	L	A	A	E	.	G	K	S	V	V	F	I	S	S	E	V	E	E	L	P	L	V	C
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		S	Q	A	M	R	K	L	A	G	N	L	K	Q	S	N	T	L	L	I	F	I	N	Q	G	G	N	A	L	K	F	Y	A
Template Known Secondary structure				T										T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		2172	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190	.	.	.	.	.	.	.	.	.	2200	.	.	.