Job Description P77509 Confidence 100.00% Date Thu Jan 5 12:30:08 GMT 2012 Rank 49 Aligned Residues 219 % Identity 25% Template c3b5xB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae Resolution 5.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		T	A	T	E	A	V	P	V	A	K	V	V	A	G	N	K	R	Y	.	.	P	G	V	V	A	L	D	N	V	N	F	T	L	N	K	G	E	V	R	A	L	L	G	K	N	G	A	G	K	S	T	L	I	R	M	L	T	G	S	E	R	P	D	S	G	D	I	W	I	G	E	T	R	L	E	G	D	E	A	T
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		E	A	E	R	V	N	G	E	V	D	V	K	D	V	T	F	T	Y	Q	G	K	E	K	P	A	L	S	H	V	S	F	S	I	P	Q	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	N	L	F	T	R	F	Y	D	V	D	S	G	S	I	C	L	D	G	H	D	V	R	D	Y	K	L	T
Template Known Secondary structure				S							B			S					S	S	T	T	S			S	S		S							S	S									T	T	T	T							T	T	S			S	S					S				T	T			S	T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.												.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	R	R	A	A	E	L	G	V	R	A	V	Y	Q	E	L	S	L	V	E	G	L	T	V	A	E	N	L	C	L	G	Q	W	P	R	R	N	G	M	I	D	Y	L	Q	M	A	Q	D	A	Q	R	C	L	Q	A	L	G	V	D	V	S	P	E	Q	L	V	S	.	.	.	.	.	.	.	.	.	.	.	T
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.														.											.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.														.											.	.	.	.	.	.	.	.
Template Sequence		N	L	R	R	H	.	.	.	.	F	A	L	V	S	Q	N	V	H	L	F	N	D	.	T	I	A	N	N	I	A	Y	A	A	.	.	.	.	.	.	.	.	E	G	E	Y	T	R	E	Q	I	E	Q	A	A	R	Q	A	H	A	M	E	F	I	E	N	M	P	Q	G	L	D	T	V	I	G	E	N	G	T	S
Template Known Secondary structure		S	S	S	T	T	.	.	.	.						S	S					T	T	.								T	T	S	.	.	.	.	.	.	.	.	S	S	S			S		S	T	T						T	S	T	T	T	T	T	T	S	S	S	S		S	S					S	S		S	S
Template Predicted Secondary structure							.	.	.	.														.											.	.	.	.	.	.	.	.
Template SS confidence
		414	.	.	.	.					.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.									.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	P	A	Q	K	Q	L	V	E	I	A	R	V	M	K	G	E	P	R	V	V	I	L	D	E	P	T	S	S	L	A	S	A	E	V	E	L	V	I	S	A	V	K	K	M	S	A	L	G	V	A	V	I	Y	V	S	H	R	M	E	E	I	R	R	I	A	S	C	A	T	V	M	R	D	G	Q	V	A	G
Query Conservation
Alig confidence																																																		.																	.
Template Conservation																																																		.																	.
Template Sequence		L	S	G	G	Q	R	Q	R	V	A	I	A	R	A	L	L	R	D	A	P	V	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	.	N	K	T	V	L	V	I	A	H	R	L	S	T	I	E	Q	.	A	D	E	I	L	V	V	D	E	G	E	I	I	E
Template Known Secondary structure		S		T	T												T				S	S						S		S	S			T	T	T										T	T	T	T	.	T	S							S		G	G	G	G	G	T	.		S							S	S
Template Predicted Secondary structure																																																		.																	.
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.		.	.	.	.	.	550	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	M	L	E	N	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	R	H	A	D	L
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		559	560	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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