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Job DescriptionP77509
Confidence100.00%DateThu Jan 5 12:30:08 GMT 2012
Rank6Aligned Residues471
% Identity23%Templatec2ygrD_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:uvrabc system protein a; PDBTitle: mycobacterium tuberculosis uvra
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50... ......60........
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Query Sequence  VAGNKRYPGVVALDNVNFTLNKGEVRALLGKNGAGKSTLI. . . . . . . . . . . . . . . . . . . . . RMLTGSERPDSGDIW. . . .
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Template Sequence  DRLIVKGAREHNLRSVDLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSP
Template Known Secondary structure 

SSS

SSSS
STTSSTTTTTT
STTTS




SS


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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   6970....... ..80..... ....90.....
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Query Sequence  . . . IGETRLEGD. . . . . . EATLTRRA. . . . . AELGVRAVYQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTPHCPTCGERVARQTPQQIVDQVLAMPEGTRFLVLAPVVRTRKGE
Template Known Secondary structure 
S





TT
BTTSSB
B
TTT

B
B


SS

SS


SSSSB
S
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
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Template Sequence  FADLFDKLNAQGYSRVRVDGVVHPLTDPPRARRQEKHDIEVVVDKRRLTDSVETALNLADGIVVLEFVDHRFSEKLACPN
Template Known Secondary structure  TTS

S
BSSS
B
TTS




TTS
B




SSS







TTBB
TT
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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
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Template Sequence  GHALAVDDLEPRSFSFNSPYGACPDCSGLGIRKEVDPELVVPDPDRTLAQGAVAPWSNGHTAEYFTRMMAGLGEALGFDV
Template Known Secondary structure 



S
S


GGGG
TTSTTTBBTTBSSS


SS

SSSSS
S
STT
SSTTS

S
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   260.........270.........280.........290.........300.........310.........320.........330.........
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation    
       

 
                          
  
               
        
  
 
 

   
Template Sequence  DTPPAKARKAILEGADEQVHVRYRNRYGRTRSYYADFEGVLAFLQRKMSQTESEQMKERYEGFMRDVPCPVCAGTRLKPE
Template Known Secondary structure  S


T


S





SSS









S
TTTT
TTTTTS
B
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   340.........350.........360.........370.........380.........390.........400.........410.........
 
   96...100.........110.........120.........130... ......140.. .......150.........160.
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Query Sequence  . . . . . . . ELSLVEGLTVAENLCLGQWPRRNGMIDYLQMAQDAQRC. . . . . . LQALGVDVS. PEQLVSTLSPAQKQLVEIA
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Template Conservation 

      
     
 
  
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Template Sequence  ILAVTLKSIAEVCELSIADCADFLN. ALTLGPREQAIAGQVLKEIRSRLGFLLDVGLEYLSLSRAAATLSGGEAQRIRLA
Template Known Secondary structure  T
B

GGG


TT.

TTSTT
TTS
TTSBGGG

Template Predicted Secondary structure 



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   424.....430.........440........ .450.........460.........470.........480.........490.........500..
 
   162....... 170.........180.........190.........200.........210.........220.. .......230...
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Query Sequence  RVMKGEPR. . VVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASCATVM. . . . . . RDGQVAGDVML
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Template Sequence  TQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTI. EHADWIVDIGPGAGEHGGRIVHSGPY
Template Known Secondary structure  TT


S

TTTT


B

.T
SSSSSGGG

S
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   513......520.........530.........540.........550.........560..... ....570.........580.........590.
 
   234.. ...240.........250.........260.........270.........280.........290.........300...... ...
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Query Sequence  ENT. . STHHIVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKPKLEDISFTLRRGEVLGIAGLLGAGRSELLK. . AIV
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Template Sequence  DELLRNKDSITGAYLSGRESIEIPAIRRSVDPRRQLTVVGAREHN. LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAA
Template Known Secondary structure 
SS
TS





SS




TTS
STT.

SSSSSTTSST
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   592.......600.........610.........620.........630...... ...640.........650.........660.........670
 
   310.........320.........330.........340......
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Query Sequence  GLEEYEQGEIVINGEKITRPDYGDMLKRGIGYTPENR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 
      
 
   
               
    
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Template Sequence  VLANRLNGARQVPGRHTRVTGLDY. . LDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNV
Template Known Secondary structure  TS






SS


GGG..




S
S
SSTT
STTSTTT

GGGS
TTS
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   671........680.........690.... .....700.........710.........720.........730.........740........
 
   347..350.........360.........370.........380.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KEAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEV
Query Conservation  .......................................         

 

  
                        
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Template Sequence  KGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAE. . . FFEPIAGVHRYLRT
Template Known Secondary structure  TTTB
SSSTTSS

SSS


TTTTS
SB
T

BTTB
TSB...STT
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   749750.........760.........770.........780.........790.........800.........810. ........820.....
 
   388.390.........400.........410.........420.. .......430.........440.........450.........460....
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Query Sequence  MQRMTVKAASSETPIGTLSGGNQQKVVIGRWVYAA. . . SQILLLDEPTRGVDIEAKQQIYRIVRELAAEGKSVVFISSEV
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Template Sequence  LVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL
Template Known Secondary structure  SS
SSSBTT

GGGS
SSS


SS
SSSTT

T



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   826...830.........840.........850.........860.........870.........880.........890.........900.....
 
   465....470....... ..480.........490.......
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Query Sequence  EELPLVCDRILLL. . . . . . QHGTFSQEFHAPVNVDELMS
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Template Sequence  DVI. KTSDWIIDLGPEGGAGGGTVVA. . . . QGTPEDVAA
Template Known Secondary structure  .
SSSSTTS
S....
S
TT
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   906.. .910.........920.........930 .........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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