Job Description P77509 Confidence 100.00% Date Thu Jan 5 12:30:08 GMT 2012 Rank 8 Aligned Residues 428 % Identity 18% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.										60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence		G	K	N	G	A	G	K	S	T	L	I	R	M	L	T	G	S	.	.	.	.	.	.	.	.	.	E	R	P	D	S	G	D	I	W	I	G	E	T	R	L	E	G	D	E	A	T	L	T	R	R	A	A	E	L	G	V	R	A	V	Y	Q	E	L	S	L	V	E	G	L	T	V	A	E	N	L	C	L	G	Q
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		T	E	S	A	S	M	K	K	R	V	Q	G	Y	M	I	S	E	E	C	P	L	C	H	G	K	R	L	R	Q	E	A	L	N	V	T	F	A	G	L	D	I	T	E	L	S	R	L	P	L	A	R	V	S	E	.	.	.	.	.	L	L	R	P	Y	A	E	E	R	E	P	G	H	A	E	R	V	K	N	R	P
Template Known Secondary structure													T	T							T	T	T	T	T	S		B						T		B	B	T	T	B						T	T	S	B							.	.	.	.	.								T		S	T	T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.						.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																															.																												.	.
Query SS confidence																															.																												.	.
Query Sequence		W	P	R	R	N	G	M	I	D	Y	L	Q	M	A	Q	D	A	Q	R	C	L	Q	A	L	G	V	D	V	S	.	P	E	Q	L	V	S	T	L	S	P	A	Q	K	Q	L	V	E	I	A	R	V	M	K	G	E	P	R	.	.	V	V	I	L	D	E	P	T	S	S	L	A	S	A	E	V	E	L	V	I	S
Query Conservation																															.																												.	.
Alig confidence																			.												.																												.	.
Template Conservation																			.
Template Sequence		E	Q	A	I	A	L	Q	R	M	A	A	D	L	V	K	R	L	.	D	V	L	L	H	L	G	L	G	Y	L	G	L	D	R	S	T	P	T	L	S	P	G	E	L	Q	R	L	R	L	A	T	Q	L	Y	S	N	L	F	G	V	V	Y	V	L	D	E	P	S	A	G	L	H	P	A	D	T	E	A	L	L	S
Template Known Secondary structure																			.						T	T		T	T	S	B	S	S		B	G	G	G	S														T	T	S				S								T	T	T	T			T	T	S
Template Predicted Secondary structure																			.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.							.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		A	V	K	K	M	S	A	L	G	V	A	V	I	Y	V	S	H	R	M	E	E	I	R	R	I	A	S	C	A	T	V	M	.	.	.	.	.	.	R	D	G	Q	V	A	G	D	V	M	L	E	N	T	S	T	H	H	I	V	S	L	M	L	G	R	D	H	V	D	I	A	P	V	A	P	Q	E	I	V	D	Q
Query Conservation																																		.	.	.	.	.	.
Alig confidence																									.									.	.	.	.	.	.																															.
Template Conservation																									.																																													.
Template Sequence		A	L	E	N	L	K	R	G	G	N	S	L	F	V	V	E	H	D	L	D	V	I	R	.	R	A	D	W	L	V	D	V	G	P	E	A	G	E	K	G	G	E	I	L	Y	S	G	P	P	E	G	L	K	H	V	P	E	S	Q	T	G	Q	Y	L	F	A	D	R	.	H	T	E	P	H	T	P	R	E	P	A
Template Known Secondary structure								T	T	T															.			S							S	S	S	G	G	G			S							G	G	G	G	G	S		T	T									T			.											S
Template Predicted Secondary structure																									.																																													.
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.		.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.		490	.	.	.	.	.	.	.	.	.	500
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.						.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		A	V	L	E	V	R	A	L	R	H	K	P	K	L	E	D	I	S	F	T	L	R	R	G	E	V	L	G	I	A	G	L	L	G	A	G	R	S	E	L	L	K	.	.	.	.	.	A	I	V	G	L	E	E	Y	E	Q	G	E	I	V	I	N	G	E	K	I	T	R	P	D	Y	G	D	M	L	K	R	G	I
Query Conservation																																												.	.	.	.	.
Alig confidence														.																														.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation														.																																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		G	W	L	E	L	N	G	V	T	R	N	N	.	L	D	N	L	D	V	R	F	P	L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A	R	L	G	G	D	L	A	Q	I	T	R	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure												T	T	.											S	S							S	T	T	S	S						T	T										S									S	S	G	G	G				.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.																																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.		.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.											.
		340	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Y	T	P	E	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	V	D	Q	K	P	I	G	R	T	P	R	S	N	M	A	T	Y	T	G	L	F	D	Q	V	R	K	L	F	A	A	T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M	V	P	S	V	Y	A	P	C	P	V	C	H	G	T	R
Template Known Secondary structure						S	S		S		S	S	T	T								T	T								T	T	S	S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T														T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
						347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	K	E	A	G	I	I	P	W	L	G	V	D	E	N	T	V	L	T	N	R	Q	K	I	S	A	N	G	V	L	Q	W	S	T	I	R	R	L	T	E	E	V	M	Q	R	M	T	V	K	A	A	S	S	E	T	P	I	G	T	L	S	G	G	N	Q	Q	K	V	V	I	G	R	W	V	Y	A	A
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																									.	.	.
Template Conservation																														.	.	.
Template Sequence		Y	N	A	E	T	L	E	V	E	Y	R	G	K	N	I	A	D	V	L	A	L	T	V	D	E	A	H	D	.	.	.	F	F	A	D	E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	Y	L	R	L	G	Q	P	A	T	E	L	S	G	G	E	A	Q	R	I	K	L	A	T	E	L	R	R	S
Template Known Secondary structure		B		T	T	G	G	G			S	S	S								T		B							.	.	.		T	T	T															T		T	T	S	B	T	T			G	G	G			S															S
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.				700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.
		423	.				.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.							.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure				.	.	.																																																						.	.	.	.	.	.
Query SS confidence				.	.	.																																																						.	.	.	.	.	.
Query Sequence		S	Q	.	.	.	I	L	L	L	D	E	P	T	R	G	V	D	I	E	A	K	Q	Q	I	Y	R	I	V	R	E	L	A	A	E	G	K	S	V	V	F	I	S	S	E	V	E	E	L	P	L	V	C	D	R	I	L	L	L	.	.	.	.	.	.	Q	H	G	T	F	S	Q	E	F	H	A	P	V	N	V	D
Query Conservation				.	.	.																																																						.	.	.	.	.	.
Alig confidence				.	.	.																																												.										.	.	.	.	.	.								.	.	.	.
Template Conservation																																																		.																							.	.	.	.
Template Sequence		G	R	G	G	T	V	Y	V	L	D	E	P	T	T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L	V	D	A	G	N	T	V	I	A	V	E	H	K	M	Q	V	V	.	A	A	S	D	W	V	L	D	I	G	P	G	A	G	E	D	G	G	R	L	V	A	.	.	.	.	Q	G	T	P	A
Template Known Secondary structure		S	S	S									S		S	S																			T	T														.	T	T		S							S	S	S	G	G	G			S				.	.	.	.			S
Template Predicted Secondary structure																																																		.																							.	.	.	.
Template SS confidence
		749	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.					.	820	.	.	.
		494	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	A	Q
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		824	.	.	.