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Job DescriptionP77509
Confidence100.00%DateThu Jan 5 12:30:08 GMT 2012
Rank5Aligned Residues432
% Identity21%Templatec2iw3B_
PDB info PDB header:translationChain: B: PDB Molecule:elongation factor 3a; PDBTitle: elongation factor 3 in complex with adp
Resolution2.4 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.........70.........80.........90
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Query Sequence  AKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGKNGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELGV
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Template Sequence  LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRT. . . . . . . . . . . . . . . . . V
Template Known Secondary structure  TTTT

STTSSTT
STT


TTTS
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   430.........440.........450.........460.........470.........480.........490. .
 
   91........100.........110.........120.........130.........140.. .......150.........160.........
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Query Sequence  RAVYQELSLVEGLTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQALGVDVS. PEQLVSTLSPAQKQLVEIARVMKGEPR
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Template Sequence  YVEHDIDGTHSDTSVLDFVFE. . . . . . . . . . SGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNAD
Template Known Secondary structure  TT






TTSBT..........T

S
T

SBGGG

TT
S
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   493......500.........510... ......520.........530.........540.........550.........560..
 
   170.........180.........190.........200.........210.........220.........230 .........240
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Query Sequence  VVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASCATVMRDGQVAGD. . . . . . . . . VMLENTSTHH
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Template Sequence  ILLLDEPTNHLDTVNVAWLVNYLNTC. . . GITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEE
Template Known Secondary structure  STTTT

S...
S
S

STTS

GGGGGTT
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   563......570.........580........ .590.........600.........610.........620.........630.........
 
   241........250.........260.........270...... ...280.........290.........300.........310....
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Query Sequence  IVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKP. . . . . . KLEDISFTLRRGEVLGIAGLLGAGRSELLKAIVGLEEY
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Template Sequence  LSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP
Template Known Secondary structure  SSGGGG









TT

STTS
S

TT
SS
S
TT
SS

TTSS

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   640.........650.........660.........670.........680.........690.........700.........710.........
 
   315....320.........330.........340.........350..
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Query Sequence  EQGEIVINGEKITRPDYGDMLKRGIGYTPENRKEAGII. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TSGEVYTHENCR. . . . . . . . . . . . IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETXDRANRQINENDAEAXNKIF
Template Known Secondary structure  S
TT

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GGG
TTS
TTTSS
TTTTTTTS



SS
SSSTT

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   720.........730. ........740.........750.........760.........770.........780.......
 
   353......360.........370.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PWLGVDENTVLTNRQKISANGVLQW
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Template Conservation                                                                                  
Template Sequence  KIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGXKSERWVPXXSVDNAWIPRGELVESHSKXVAEVDXKEALASGQFR
Template Known Secondary structure  TTTTSSSSTT


GGG
GGGTTT


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   788.790.........800.........810.........820.........830.........840.........850.........860.......
 
   378.380.........390........ .400.........410.........420.........430.........440.........450......
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Query Sequence  STIRRLTEEVMQRMTVKAASS. ETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVRELAAEGKS
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Template Sequence  PLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF. . . EGG
Template Known Secondary structure 


TT

S
GGGS
TTT

S
GGGT


...SS
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   868.870.........880.........890.........900.........910.........920.........930.........940. ...
 
   457..460.........470.........480.......
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Query Sequence  VVFISSEVEELPLVCDRILLLQHGTFSQEFH
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Template Sequence  VIIITHSAEFTKNLTEEVWAVKDGRXTPSGH
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S
TTT


BTTB



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   945....950.........960.........970.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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