Job Description P77509 Confidence 100.00% Date Thu Jan 5 12:30:08 GMT 2012 Rank 24 Aligned Residues 276 % Identity 25% Template c1vciA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp Resolution 2.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	V	V	A	G	N	K	R	Y	P	G	V	V	A	L	D	N	V	N	F	T	L	N	K	G	E	V	R	A	L	L	G	K	N	G	A	G	K	S	T	L	I	R	M	L	T	G	S	E	R	P	D	S	G	D	I	W	I	G	E	T	R	L	E	G	D	E	A	T	L	T	R	R	A	A	E	L	G	V
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.
Template Sequence		V	K	L	E	N	L	T	K	R	F	G	N	F	T	A	V	N	K	L	N	L	T	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	M	I	A	G	L	E	E	P	T	E	G	R	I	Y	F	G	D	R	D	V	T	Y	L	P	P	K	D	R	N	.	.	.	.	.	.	I
Template Known Secondary structure												T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	G	T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.							.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	V	Y	Q	E	L	S	L	V	E	G	L	T	V	A	E	N	L	C	L	G	Q	W	P	R	R	N	G	M	I	D	Y	L	Q	M	A	Q	D	A	Q	R	C	L	Q	A	L	G	V	D	V	S	P	E	Q	L	V	S	T	L	S	P	A	Q	K	Q	L	V	E	I	A	R	V	M	K	G	E	P	R	V
Query Conservation
Alig confidence								.	.	.	.	.	.									.	.	.	.	.
Template Conservation								.	.	.	.	.	.									.	.	.	.	.
Template Sequence		S	M	V	F	Q	H	.	.	.	.	.	.	M	T	V	Y	E	N	I	A	.	.	.	.	.	F	P	L	K	K	F	P	K	D	E	I	D	K	R	V	R	W	A	A	E	L	L	Q	I	E	E	L	L	N	R	Y	P	A	Q	L	S	G	G	Q	R	Q	R	V	A	V	A	R	A	I	V	V	E	P	D	V
Template Known Secondary structure								.	.	.	.	.	.									.	.	.	.	.	T	T																				T	T		G	G	G	T	T			G	G	G			S	S												T	T			S
Template Predicted Secondary structure								.	.	.	.	.	.									.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.							.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.
Predicted Secondary structure																											.																																													.	.	.
Query SS confidence																											.																																													.	.	.
Query Sequence		V	I	L	D	E	P	T	S	S	L	A	S	A	E	V	E	L	V	I	S	A	V	K	K	M	.	S	A	L	G	V	A	V	I	Y	V	S	H	R	M	E	E	I	R	R	I	A	S	C	A	T	V	M	R	D	G	Q	V	A	G	D	V	M	L	E	N	T	S	T	H	.	.	.	H	I	V	S	L	M	L
Query Conservation																											.																																													.	.	.
Alig confidence																											.																																													.	.	.
Template Conservation
Template Sequence		L	L	M	D	E	P	L	S	N	L	D	A	K	L	R	V	A	M	R	A	E	I	K	K	L	Q	Q	K	L	K	V	T	T	I	Y	V	T	H	D	Q	V	E	A	M	T	M	G	D	R	I	A	V	M	N	R	G	Q	L	L	Q	I	G	S	P	T	E	V	Y	L	R	P	N	S	V	F	V	A	T	F	I
Template Known Secondary structure						S	T	T	T	T	S																												S										S							T	T														S		S	B							S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.						.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		G	R	D	H	V	D	I	A	P	V	A	P	.	.	.	.	.	Q	E	I	V	D	Q	A	V	L	E	V	R	A	L	R	H	K	P	K	L	E	D	I	S	F	T	L	R	R	G	E	V	L	G	I	A	G	L	L	G	A	G	R	S	E	L
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.																													.
Template Conservation																																															.
Template Sequence		G	A	P	E	M	N	I	L	E	V	S	V	G	D	G	Y	L	E	G	R	G	F	R	I	E	L	P	Q	M	D	L	L	K	D	Y	V	G	K	T	V	L	F	G	I	R	.	P	E	H	M	T	V	E	G	V	H	M	K	R	T	A	R	L
Template Known Secondary structure		S	S	S											S	S					T	T										T	T	G	G	G	B	T	S								.	G	G	G				S					S	S
Template Predicted Secondary structure																																															.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions