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Job DescriptionP77509
Confidence100.00%DateThu Jan 5 12:30:08 GMT 2012
Rank24Aligned Residues276
% Identity25%Templatec1vciA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.........70.........80.........90
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Query Sequence  AKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGKNGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELGV
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Template Sequence  VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN. . . . . . I
Template Known Secondary structure  TT
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TTSSTSS

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   13......20.........30.........40.........50.........60.........70.........80..... .
 
   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  RAVYQELSLVEGLTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEIARVMKGEPRV
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Template Sequence  SMVFQH. . . . . . MTVYENIA. . . . . FPLKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV
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   87..90.. .......100 .........110.........120.........130.........140.........150.....
 
   171........180.........190..... ....200.........210.........220.........230......... 240......
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Query Sequence  VILDEPTSSLASAEVELVISAVKKM. SALGVAVIYVSHRMEEIRRIASCATVMRDGQVAGDVMLENTSTH. . . HIVSLML
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Template Sequence  LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFI
Template Known Secondary structure  STTTTS


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   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   247..250........ .260.........270.........280.........290.........300....
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Query Sequence  GRDHVDIAPVAP. . . . . QEIVDQAVLEVRALRHKPKLEDISFTLRRGEVLGIAGLLGAGRSEL
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Template Sequence  GAPEMNILEVSVGDGYLEGRGFRIELPQMDLLKDYVGKTVLFGIR. PEHMTVEGVHMKRTARL
Template Known Secondary structure  SSS


SSTT




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   244.....250.........260.........270.........280........ .290.........300.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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