Job Description P23836 Confidence 24.66% Date Thu Jan 5 11:39:41 GMT 2012 Rank 480 Aligned Residues 97 % Identity 15% Template c3eafA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.					.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.										.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		R	V	L	V	V	E	D	N	A	L	.	.	.	.	L	R	H	H	L	K	V	Q	I	Q	D	A	G	H	Q	V	D	D	A	E	.	.	.	.	.	.	.	.	.	D	A	K	E	A	D	Y	Y	L	N	E	H	I	P	D	I	A	I	V	D	L	G	L	P	D	E	D	G	L	S	L	I	R	R	W	R	S
Query Conservation												.	.	.	.																					.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.																					.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																																															.	.
Template Sequence		L	A	L	A	Y	D	S	K	V	A	Y	S	R	S	P	I	G	A	I	K	K	A	A	P	S	L	G	L	Q	V	V	G	D	Y	D	L	P	L	R	A	T	E	A	D	A	E	R	I	A	R	E	X	L	A	A	D	P	D	Y	V	W	.	.	C	G	N	T	I	S	S	C	S	L	L	G	R	A	X	A	K
Template Known Secondary structure								T	T						T	T								T	G	G	G	T											T	T															T	T			S				.	.			S
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	V	S	L	P	I	L	V	L	T	A	R	E	S	W	Q	D	K	V	E	V	L	S	A	G	A	D	D	Y	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	L	D	A	F	L	L	T	N	V	W	G	F	D	E	R	S	P	Q	L	I	G	E	G	G	Y	G	K	V	F	G
Template Known Secondary structure			T									G	G	G		S	T	T							G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions