Job Description P23836 Confidence 97.74% Date Thu Jan 5 11:39:41 GMT 2012 Rank 132 Aligned Residues 70 % Identity 11% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	L	S	I	N	D	E	V	I	K	L	T	A	F	E	Y	T	I	M	E	T	L	I	R	N	N	G	K	V	V	S	K	D	S	L	M	L	Q	L	Y	P	D	A	E	L	R	E	S	H	T	I	D	V	L	M	G	R	L	R	K	K	I	Q	A	Q	Y	P	Q	E	V	I	T	T	V	R	G	Q	G
Query Conservation
Alig confidence																												.	.	.	.											.	.	.	.	.
Template Conservation																												.	.	.	.											.	.	.	.	.
Template Sequence		R	T	T	P	T	A	E	D	A	A	W	L	D	P	K	E	A	T	Y	L	R	W	I	A	V	G	.	.	.	.	K	T	X	E	E	I	A	D	V	E	.	.	.	.	.	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D	V	R	S	K	A	H	L	T	A	L	A	I	R	R	K
Template Known Secondary structure		T				S		B																	T	T	T	.	.	.	.										T	.	.	.	.	.	T																		T		S	S											T	T
Template Predicted Secondary structure																												.	.	.	.											.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.					.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions