Job Description P69407 Confidence 99.08% Date Thu Jan 5 12:11:30 GMT 2012 Rank 80 Aligned Residues 110 % Identity 15% Template c2zwmA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis Resolution 2.04 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	I	I	A	D	D	H	P	I	V	L	F	G	I	R	K	S	L	E	Q	I	E	W	V	N	V	V	G	E	F	E	D	S	T	A	L	I	N	N	L	P	K	L	D	A	H	V	L	I	T	D	L	S	M	P	G	D	K	Y	G	D	G	I	T	L	I	K	Y	I	K	R	H	F	P	S	L	S	I	I
Query Conservation
Alig confidence																										.	.																																													.	.	.	.
Template Conservation																										.	.																																													.	.	.	.
Template Sequence		K	I	L	V	V	D	D	E	K	P	I	A	D	I	L	E	F	N	L	R	K	E	G	Y	.	.	E	V	H	C	A	H	D	G	N	E	A	V	E	M	V	E	E	L	Q	P	D	L	I	L	L	D	I	M	L	P	N	K	D	G	V	E	V	C	R	E	V	R	K	K	.	.	.	.	Y	D	M	P	I	I
Template Known Secondary structure								S																T		.	.							S														S						T	T		S	S	S													.	.	.	.			S
Template Predicted Secondary structure																										.	.																																													.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	M	N	N	N	P	A	I	L	S	A	V	L	D	L	D	I	E	G	I	V	L	K	Q	G	A	P	T	D	L	P	K	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	T	A	K	D	S	E	I	D	K	V	I	G	L	E	I	G	A	D	D	Y	V	T	K	P	F	S	T	R	E	L	L	A	R	V
Template Known Secondary structure						T	T											T	T								S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions