Job Description P69407 Confidence 67.52% Date Thu Jan 5 12:11:30 GMT 2012 Rank 398 Aligned Residues 170 % Identity 13% Template c2q5cA_ PDB info PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum Resolution 1.49 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		N	N	M	N	V	I	I	A	D	D	H	P	I	V	L	F	G	I	R	K	S	L	E	Q	I	E	W	V	N	V	V	G	E	F	E	D	S	T	A	L	I	N	N	L	P	K	.	.	L	D	A	H	V	L	I	T	D	L	S	M	P	G	D	K	Y	G	D	G	I	T	L	I	K	Y	I	K	R	H	F	P
Query Conservation																																																.	.
Alig confidence																											.																					.	.								.	.	.	.	.	.	.	.														.	.
Template Conservation																											.																														.	.	.	.	.	.	.	.														.	.
Template Sequence		L	S	L	K	I	A	L	I	S	Q	N	E	N	L	L	N	L	F	P	K	L	A	L	E	K	.	N	F	I	P	I	T	K	T	A	S	L	T	R	A	S	K	I	A	F	G	L	Q	D	E	V	D	A	I	I	.	.	.	.	.	.	.	.	S	R	G	A	T	S	D	Y	I	K	K	S	V	.	.	S	I
Template Known Secondary structure											S																.	T																					T	T	T		S				.	.	.	.	.	.	.	.											T	T		.	.	S	S
Template Predicted Secondary structure																											.																														.	.	.	.	.	.	.	.														.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.									.	.	.	.	.	60	.	.	.	.	.	.	.			.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	S	I	I	V	L	T	M	N	N	N	P	A	I	L	S	A	V	L	D	L	D	I	E	G	I	V	L	K	Q	G	A	P	T	D	L	P	K	A	L	A	A	L	Q	K	G	K	K	F	T	P	E	S	V	S	R	L	L	E	K	I	S	A	G	G	Y	G	D	K	R	L	S	P	K	E	S	E	V	L
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	I	S	I	K	V	T	R	F	D	T	M	R	A	V	Y	N	A	K	R	F	G	N	E	L	A	L	I	A	Y	K	H	S	I	V	D	K	H	E	I	E	A	M	L	G	V	K	I	K	E	F	L	F	S	S	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	T	T	L	I	S
Template Known Secondary structure																					G	G	G		S								S	S		S	S										T										S	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																.	.	130	.	.	.	.
		160	.	.	.	.	.	.								.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.												.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.												.	.	.	.	.	.	.
Query Sequence		R	L	F	A	E	G	F	.	.	.	.	.	.	.	L	V	T	E	I	A	K	K	L	N	R	.	.	.	.	.	.	.	S	I	K	T	I	S	S	Q	K	K	S	A	M	M	K	L	G	V	E	N
Query Conservation									.	.	.	.	.	.	.												.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	K	T	E	N	I	K	I	V	V	S	G	K	T	V	T	D	E	A	I	K	Q	G	L	Y	G	E	T	I	N	S	G	E	E	S	L	R	R	A	I	E	E	A	L	N	L	I	E	V	R	N
Template Known Secondary structure						T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions