Job Description P45463 Confidence 99.78% Date Thu Jan 5 12:02:41 GMT 2012 Rank 14 Aligned Residues 207 % Identity 13% Template c3oxnD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		T	R	P	E	G	M	I	R	I	G	C	S	F	G	F	G	R	S	H	I	A	P	A	I	T	E	L	M	R	N	Y	P	E	L	Q	V	H	F	.	.	.	E	L	F	D	R	Q	I	D	L	V	Q	D	N	I	D	L	D	I	R	I	N	D	E	I	P	D	Y	Y	I	A	H	L	L	T	K	N	K	R	I
Query Conservation																																								.	.	.
Alig confidence																																								.	.	.
Template Conservation
Template Sequence		Q	Q	C	D	Q	T	F	T	I	A	T	T	D	Y	A	X	Q	T	I	L	P	F	A	L	P	R	I	Y	Q	E	A	P	N	V	S	F	N	F	L	P	L	Q	H	D	R	L	S	D	Q	L	T	Y	E	G	A	D	L	A	I	C	R	P	T	G	P	V	E	P	L	R	S	E	I	L	G	R	V	G	V	L
Template Known Secondary structure			S																T														T	T										G	G	G							T	S			S							S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	A	A	P	E	Y	L	Q	K	Y	P	Q	P	Q	S	L	Q	E	L	S	R	H	D	C	L	V	T	K	E	R	D	M	T	H	G	I	W	E	L	G	N	G	Q	E	K	K	S	V	K	V	S	G	H	L	S	S	N	S	G	E	I	V	L	Q	W	A	L	E	G	K	G	I	M	L	R	S	E	W	D
Query Conservation
Alig confidence										.																												.	.	.
Template Conservation										.																												.	.	.
Template Sequence		C	L	L	S	K	Q	H	P	.	L	A	N	Q	E	X	S	L	D	D	Y	L	S	H	P	H	A	X	I	A	I	S	D	G	V	K	A	.	.	.	L	I	E	Q	A	L	I	D	K	P	Q	R	K	X	V	L	R	A	Y	H	L	E	A	A	L	A	I	V	D	T	L	P	I	I	I	T	V	P	A	D	L
Template Known Secondary structure						T	T	S	G	.	G	G	S	S										S						S								.	.	.						T	S	S	S										S										T	T	S
Template Predicted Secondary structure										.																												.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		V	L	P	F	L	E	S	G	K	L	V	Q	V	.	L	P	E	Y	A	Q	S	A	N	I	W	A	V	Y	R	E	P	L	Y	R	S	M	K	L	R	V	C	V	E	F	L	A	A	W	C	Q	Q	R	L	G	K
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		A	Y	L	V	A	E	R	Y	D	L	V	V	K	P	L	P	F	Q	F	T	P	F	D	Y	S	X	I	W	H	A	R	C	E	H	S	P	A	Q	E	W	L	R	S	V	V	R	E	E	C	S	R	L	I	A	K
Template Known Secondary structure										T							S	S													G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions