Job Description P45463 Confidence 55.99% Date Thu Jan 5 12:02:41 GMT 2012 Rank 301 Aligned Residues 89 % Identity 7% Template c2k27A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		W	P	L	A	K	D	L	Q	V	L	V	E	I	V	H	S	G	S	F	S	A	A	A	A	T	L	G	Q	T	P	A	F	V	T	K	R	I	Q	I	L	E	N	T	L	A	T	T	L	L	N	R	S	A	R	G	V	A	.	L	T	E	S	G	Q	R	C	Y	E	H	A	L	E	I	L	T	Q	Y	Q	R	L
Query Conservation																																																											.
Alig confidence																																																											.
Template Conservation
Template Sequence		L	P	E	V	V	R	Q	R	I	V	D	L	A	H	Q	G	V	R	P	C	D	I	S	R	Q	L	R	V	S	H	G	C	V	S	K	I	L	G	R	Y	Y	E	T	G	S	I	R	P	G	V	I	G	G	S	K	P	K	V	A	T	P	K	V	V	E	K	I	G	D	Y	K	R	Q	N	P	T	M	F	A	W
Template Known Secondary structure		S															T											T			S										S	S	T	T	S																	T	T													S	S	S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	D	V	T	Q	I	K	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	R	D	R	L	L	A	E	G
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions