Return to main results Retrieve Phyre Job Id

Job DescriptionP45463
Confidence86.83%DateThu Jan 5 12:02:41 GMT 2012
Rank200Aligned Residues202
% Identity10%Templatec1twyG_
PDB info PDB header:structural genomics, unknown functionChain: G: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of an abc-type phosphate transport receptor from2 vibrio cholerae
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   97..100.........110.........120.........130.........140.........150. ........160.........
Predicted Secondary structure 


























.......














Query SS confidence 






















































. . . . . . .

















Query Sequence  MIRIGCSFGFGRSHIAPAITELMRNYPELQVHFELFDRQIDLVQDNIDLDIRIND. . . . . . . EIPDYYIAHLLTKNKRIL
Query Conservation                            
   
                        .......                  
Alig confidence 










.










































.......

















Template Conservation   
 
 

 
  .     
   
 
  
 
 
      
      
  
  
                             
Template Sequence  EITISGSTSVA. RIXDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAXTSRYLTESEAQNTLHTFTLAFDGLAI
Template Known Secondary structure 
.
TT
S
TTS
SSS


TTT

TT
Template Predicted Secondary structure 

.























Template SS confidence 















































































   2930......... 40.........50.........60.........70.........80.........90.........100.......
 
   170.........180........ .190.........200.........210.........220..... ..
Predicted Secondary structure 










...............























.......

Query SS confidence 


















. . . . . . . . . . . . . . .




































. . . . . . .

Query Sequence  CAAPEYLQKYPQPQSLQEL. . . . . . . . . . . . . . . SRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSS. . . . . . . NS
Query Conservation                    
...............     
                               .......  
Alig confidence 


















...............




































.......

Template Conservation                 
                                                                
Template Sequence  VVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLXGLTKTVKDREVSDVAPTALVVNSN
Template Known Secondary structure 
TT




TS

BGGGGTS
S
B

TT
T

SSS
S
TT
SS
Template Predicted Secondary structure 













































Template SS confidence 















































































   108.110.........120.........130.........140.........150.........160.........170.........180.......
 
   228.230.........240.........250.........260...... ...270.........280.........290.........
Predicted Secondary structure 














........








Query SS confidence 






































. . . . . . . .
































Query Sequence  GEIVLQWALEGKGIMLRSEWDVLPFLESGKLVQVLPEYA. . . . . . . . QSANIWAVYREPLYRSMKLRVCVEFLAAWCQQR
Query Conservation         
  
 


 

            

       ........      
                  
       
Alig confidence 






































........








.






















Template Conservation                                     
          

      
 .
       
  

 

 
 


 
Template Sequence  SXXKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILH. YSDNADEQTKEFIAFLKSESAKK
Template Known Secondary structure 
TTGGG

TTSTTB


TT

S
.TTT

TS
Template Predicted Secondary structure 

























.






Template SS confidence 















































































   188.190.........200.........210.........220.........230.........240... ......250.........260......
 
   300
Predicted Secondary structure 
Query SS confidence 
Query Sequence  L
Query Conservation   
Alig confidence 
Template Conservation 
Template Sequence  L
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   267
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions