Job Description Q46840 Confidence 97.84% Date Thu Jan 5 12:35:05 GMT 2012 Rank 145 Aligned Residues 249 % Identity 17% Template c1p4nA_ PDB info PDB header:ligase Chain: A: PDB Molecule:femx; PDBTitle: crystal structure of weissella viridescens femx:udp-murnac-2 pentapeptide complex Resolution 1.90 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		W	Q	A	W	V	A	K	K	A	G	Q	I	V	G	R	I	T	A	Q	I	D	T	L	H	R	E	R	Y	G	K	D	T	G	H	F	.	.	G	M	I	D	A	I	D	D	P	Q	V	F	A	A	L	F	G	A	A	E	A	W	L	K	S	Q	G	A	S	K	I	S	G	P	F	S	L	N	I	N	Q	E	S
Query Conservation																																					.	.
Alig confidence																						.	.	.													.	.																																											.
Template Conservation																						.	.	.																																																									.
Template Sequence		V	D	V	Y	L	E	D	D	Q	G	A	I	I	A	A	M	S	M	L	L	.	.	.	G	D	T	P	T	D	K	K	F	A	Y	A	S	K	G	P	V	M	D	V	T	D	V	D	L	L	D	R	L	V	D	E	A	V	K	A	L	D	G	R	A	Y	V	L	R	F	D	P	E	V	A	Y	S	D	E	F	.
Template Known Secondary structure									T	T	S											.	.	.				S	S	S	S						T	T			B	S		T	T																	T	T										S		B						.
Template Predicted Secondary structure																						.	.	.																																																									.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160														.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.										.	.	.	180	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	L	I	E	G	F	D	T	P	P	C	A	M	M	P	H	G	K	P	W	Y	A	A	H	I	E	Q	L	G	Y	H	K	G	I	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	W	W	M	Q	R	T	D	L	T	F	S	P	A	L	.	.	.	.	.	.	.	.	.	K	K	L	M	D
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	T	L	Q	D	H	G	Y	V	T	R	N	R	N	V	A	D	A	G	M	H	A	T	I	Q	P	R	L	N	M	V	L	D	L	T	K	F	P	D	A	K	T	T	L	D	L	Y	P	S	K	T	K	S	K	I	K	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T					S	T	T	S		S	S	S	T	T	S		S	S		S							G	G	G		T	T			S	G	G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																								118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	R	K	K	V	T	I	R	C	I	N	R	Q	R	F	A	E	E	M	Q	I	L	R	E	I	F	N	S	G	W	Q	H	N	W	G	F	V	P	F	T	E	H	E	F	A	T	M	G	D	Q	L	K	Y	L	V	P	D	D	M	I	Y	I	A	E	I	D	S	A	P	C	A	F	I	V	G	L	P	N	I
Query Conservation
Alig confidence															.	.	.																		.																			.	.																								.	.	.
Template Conservation															.	.	.																		.																			.	.																								.	.	.
Template Sequence		P	F	R	D	G	V	E	V	H	S	G	N	S	.	.	.	A	T	E	L	D	E	F	F	K	T	Y	T	T	M	A	E	R	.	H	G	I	T	H	R	P	I	E	Y	F	Q	R	M	Q	A	A	F	.	.	D	A	D	T	M	R	I	F	V	A	E	R	E	G	K	L	L	S	T	G	I	A	L	.	.	.
Template Known Secondary structure					T	T								S	.	.	.																		.		T																S	.	.		T	T	T									T	T										.	.	.
Template Predicted Secondary structure															.	.	.																		.																			.	.																								.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		N	E	A	I	A	D	L	N	G	S	L	F	P	F	G	W	A	K	L	L	W	R	L	K	V	S	G	V	R	T	A	R	V	P	L	M	G	V	R	D	E	Y	Q	F	S	R	I	G	P	V	I	A	L	L	L	I	E	A	L	R	D	P	F	A	R	R	K	I	D	A	L	E	M	S	W	I	L	E	T	.
Query Conservation																																																																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																						.	.	.	.															.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																						.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	G	R	K	I	W	Y	M	Y	A	G	S	M	.	D	G	N	T	Y	Y	A	P	Y	A	V	Q	S	E	M	I	Q	W	A	L	D	.	.	.	.	T	N	T	D	L	Y	D	L	G	G	I	E	S	E	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T											.	S	S			T	T																.	.	.	.	T	T		S								S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																						.	.	.	.
Template SS confidence
																											247	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
			341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	T	G	M	N	N	M	L	E	R	I	G	A	E	P	Y	K	R	Y
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		T	D	D	S	L	Y	V	F	K	H	V	F	V	K	D	A	P	R	E	Y
Template Known Secondary structure		T	T	S												S					B
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions