Job Description P36943 Confidence 4.25% Date Wed Jan 25 15:20:51 GMT 2012 Rank 50 Aligned Residues 160 % Identity 18% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																				.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	T	A	R	V	K	L	N	V	D	K	D	F	S	L	K	D	S	S	L	E	M	L	Y	P	I	Y	D	T	P	T	N	M	L	F	T	Q	G	A	I	H	R	T	D	D	R	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	I	G	F	G	W	R	H	F	S	G
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	Y	A	D	R	T	Y	P	G	D	G	G	G	K	V	K	G	L	H	V	G	G	Y	A	A	Y	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P
Template Known Secondary structure									B	T	T	T	B																		S	S	S	B																				S	S	S																				B					G
Template Predicted Secondary structure
Template SS confidence
		798	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.																		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query Sequence		N	D	W	M	A	G	V	N	T	F	I	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	S	R	S	H	T	R	I	G	V	G	A	E	Y	W	R	D	Y	.	.	.	L	K	L	S	A	N	G	Y	I	R	A	S	G	W	K	K	S	P	D	I	E	D	Y	Q	E	R	P	A
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.																			.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.
Template Sequence		N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	.	.	.	.	.	S	T	G	R	H
Template Known Secondary structure		G	G																						S	S	S																										T	T	S																	.	.	.	.	.					B
Template Predicted Secondary structure																																																																								.	.	.	.	.
Template SS confidence
		878	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.						.	.	950	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	W	D	I	R	A	E	G	Y	L	P	A	W	P	Q	L	G	A	S	L	M	Y	E	Q	Y	Y	G	D	E	V	G	L	F	G	K	D	K	R	Q	K	D	P	H	A	I	S	A	E	V	T	Y	T
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.
Template Sequence		G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	.	.	.	.	.	.	.	.	.	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S
Template Known Secondary structure															G	G	G	B												.	.	.	.	.	.	.	.	.	S	S													B
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Template SS confidence
		966	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.										.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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